Lottia gigantea (owl limpet): LOTGIDRAFT_162536
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Entry
LOTGIDRAFT_162536 CDS
T03273
Name
(RefSeq) hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
lgi
Lottia gigantea (owl limpet)
Pathway
lgi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lgi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LOTGIDRAFT_162536
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lgi03019
]
LOTGIDRAFT_162536
03041 Spliceosome [BR:
lgi03041
]
LOTGIDRAFT_162536
03009 Ribosome biogenesis [BR:
lgi03009
]
LOTGIDRAFT_162536
03016 Transfer RNA biogenesis [BR:
lgi03016
]
LOTGIDRAFT_162536
Enzymes [BR:
lgi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LOTGIDRAFT_162536
Messenger RNA biogenesis [BR:
lgi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
LOTGIDRAFT_162536
Spliceosome [BR:
lgi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
LOTGIDRAFT_162536
Complex C
U4/U6.U5 tri-SnRNP related factors
LOTGIDRAFT_162536
Ribosome biogenesis [BR:
lgi03009
]
Eukaryotic type
Pre-60S particles
Helicases
LOTGIDRAFT_162536
Transfer RNA biogenesis [BR:
lgi03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
LOTGIDRAFT_162536
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
U3_assoc_6
nSTAND3
Motif
Other DBs
NCBI-GeneID:
20239041
NCBI-ProteinID:
XP_009056760
JGI:
162536
UniProt:
V4BUA2
LinkDB
All DBs
Position
Unknown
AA seq
1025 aa
AA seq
DB search
MADAFGGDLFDVFEDSSNASKSEKSSKTKKKDSDEKSQEDLLHQIIQKRPVQESSQDEET
ETKKQKTMVDEISTFDTIPRIQIHTVETVEACLHEVAIPPDAEFTPLKPPPDKPAQEYPF
ILDPFQKEAILCLENYQSVLVSAHTSAGKTVVAVYAIAMSLREKQRVIYTSPIKALSNQK
YRELYEEFQDVGLMTGDVTINPTASVLVMTTEILRSMLYRGSEIMREVAWVIFDEIHYMR
DKERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVVYTDYRPIPLQH
YLFPSGGDGLHLVVDESGDFREENFNTAMSVLKDAGDAAKGDQKGRKGGSKAQDSNCFKI
VKMIMERNFAPVVVFSFSRKECEGYGMSMAKLDFNTVEEKKLVEEVFNNAIDALSDEDKK
LPQVEHVLPLLKKGVGIHHSGLLPILKETIEILFSEGLIKALFATETFAMGLNMPARTVL
FTSARKFDGKDFRWLTSGEYIQMSGRAGRRGLDERGIVILMIDEKMSPDVGKNLLKGLPD
PLNSAFHLTYNMVLNLLRVEEINPEYMLERSFYQFQNYAAIPDLCEKLKKKELEYKNIVI
ENEDNVAAYYKIRQQLDSLSRELLYFIRQPSYLLPFLQPGRLVKVKNDNDDYGWGVVVNF
NKKKEDKTSLEREAAVYIVDVLLYITKDGIKSRDITQVKPCPPSEKGEMQVVPIMSHLIE
GVSALRVYISKDLRPVDNRMRVYKSLVEVKKRFPDGLPQLDPIEDMGIKDKSLKEIIKKI
EAFEHRLYSHPLHKDKNLQYLYDQYDNKNRVNNEIKVIKSELKKKKSLLQMDELKKRKRV
LRRMGYATASDVIEIKGRVACEISSGDELLMTELLFNGVFNDLSPQQSCSLVSCFVFQEN
ANQLSKLSEELSGPLRIMQDTARRIARISKEAKLEIDEEVYVDGFKPHMMDVVFAWCNGS
SFAQVCQMTDCFEGSIIRCMRRLEETLRQLCQAAKAIGNTELENKFAEGIRQIKRDIVFA
ASLYL
NT seq
3078 nt
NT seq
+upstream
nt +downstream
nt
atggccgatgcatttggtggagacctgtttgatgtttttgaagattctagtaatgcatca
aagtcagaaaaatcttcgaagactaagaaaaaggatagcgatgagaagagtcaagaagac
cttctgcaccaaataatacagaaaagacctgtacaagaatcatcacaagatgaagagaca
gagactaagaaacagaaaactatggtggatgaaatcagtacatttgatactatccctaga
atacagattcatactgtagaaacagttgaggcctgtttacacgaggttgctattccacca
gatgcagaatttacaccattgaaacctccacctgataaacctgcccaagaatatccattt
attttggatccttttcaaaaggaagctatattatgtctcgagaattatcagtctgtttta
gtttctgctcatacatcagctggtaaaactgtggtagcagtgtatgctatagccatgtca
ttacgagaaaaacaaagggttatctatacctcacctattaaagctttaagtaatcagaaa
tatcgagaactatatgaagaatttcaagatgtaggattaatgactggtgatgttactatt
aatccaactgccagtgttttagttatgactacagagattttaagaagtatgttatataga
ggatctgagataatgagagaagtggcttgggttatatttgatgaaattcattatatgaga
gataaagagcgtggagtagtatgggaagaaaccatcatattattaccagataatgtacat
tatgtatttctatcagctactatacctaatgccagacagtttgctgaatggatttgtcat
cttcataaacagccatgtcatgtggtatatacagattacagacctattcccctacaacat
tatttatttccttctggtggagatggtttacatcttgtggtggatgaatctggagatttt
agagaagagaattttaacacggctatgtcagttttaaaggatgctggagatgctgctaag
ggagatcagaaaggaaggaagggtggatctaaagcccaagattcaaattgttttaaaata
gtgaaaatgataatggagaggaattttgctcctgttgttgtatttagttttagtagaaaa
gaatgtgaaggatatggtatgagtatggccaaactagattttaatacagttgaagagaag
aagttagtagaagaagtgtttaataatgctattgatgccttgtctgatgaagataaaaaa
ttacctcaggtagaacatgtattaccattattaaagaaaggtgttggaatccatcattct
ggtttattaccaatacttaaagaaactatagaaatattgttttcagagggtttgatcaag
gccttatttgccacagagacatttgccatgggattaaatatgccagcaagaacagtctta
tttacaagtgctcggaaatttgatggaaaagattttcgctggttaacgtctggagaatat
atacagatgagtggtagggctggacgtcgtggtctagatgaacgtggtattgttattctc
atgattgatgaaaaaatgagtcctgatgttggtaaaaatttactgaagggtttacctgat
ccattgaacagcgcttttcatctaacctataatatggtattaaatttattacgtgttgaa
gaaataaatcctgaatatatgttagaaagaagtttttatcagtttcaaaactatgctgct
atacctgatctttgtgaaaaattaaagaagaaagaattagaatataagaatattgtgata
gaaaatgaagataatgtagcagcctattataaaatacgtcaacaattagacagtttgagt
agagaattgttatattttatacgtcaaccatcttatttattaccattccttcaacctggt
agattagttaaagtaaagaatgataatgatgattatggttggggagttgttgttaatttt
aataagaaaaaggaagataaaacatctttagaaagagaagctgcagtatatattgttgat
gtgttactttatataactaaagatggtattaaatctcgtgatatcacacaggttaaacct
tgtccaccttcagaaaagggagaaatgcaggttgtaccaataatgagtcatttaatagaa
ggtgtgagtgcattaagagtttatatatcaaaagatttaagaccagtagataatagaatg
agagtttataaatcattagtggaggtaaagaagagattcccagatggtctaccacaatta
gatcctatagaagatatgggtattaaagacaagtcattgaaagaaataataaaaaaaata
gaagcctttgaacatagattatactctcatccactacataaagataaaaatttacagtat
ctttatgatcagtatgataacaaaaatagggtgaataatgaaataaaagttataaaaagt
gagttaaaaaagaagaaatcattgttacaaatggatgaattaaagaaacgtaaaagagta
ttaagaaggatggggtatgctacagcttctgatgttattgagatcaaaggaagagtagct
tgtgaaatcagcagtggagatgaattattaatgacagagttgttatttaatggtgttttt
aacgacctttcaccccaacaatcttgttccctagtcagctgttttgttttccaagaaaat
gccaatcagttatccaaattatccgaagaattatcaggtccactcaggatcatgcaggac
acagcacgtagaatagctagaataagtaaagaagctaagttagaaatagatgaagaagtc
tatgttgatggttttaaaccacatatgatggatgttgtttttgcttggtgtaatggttct
tcattcgctcaagtttgtcaaatgacagactgttttgaaggtagtattatcaggtgtatg
agacgtttagaggaaacattaagacagttatgtcaagcagctaaagcaataggaaacaca
gaactagaaaataagtttgctgagggtattcgacaaataaagagagatattgtatttgct
gctagtttatatttatag
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