Lottia gigantea (owl limpet): LOTGIDRAFT_163116
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Entry
LOTGIDRAFT_163116 CDS
T03273
Name
(RefSeq) hypothetical protein
KO
K10886
DNA-repair protein XRCC4
Organism
lgi
Lottia gigantea (owl limpet)
Pathway
lgi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
lgi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LOTGIDRAFT_163116
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lgi03400
]
LOTGIDRAFT_163116
DNA repair and recombination proteins [BR:
lgi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
LOTGIDRAFT_163116
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRCC4
XRCC4_CC
XLF
PAXX
DUF3490
DUF3549
SAS-6_N
Motif
Other DBs
NCBI-GeneID:
20239256
NCBI-ProteinID:
XP_009057430
JGI:
163116
UniProt:
V3ZKB8
LinkDB
All DBs
Position
Unknown
AA seq
353 aa
AA seq
DB search
MASKPSLIMSKKVLSKLSVSGSKKNYFLLSTTTEDKEDGFQLILSNGESVWEGELSADEI
DKQRKKLKMDFNTYYIQTEKAFTRSDEDKNYEYQIKINQDDTANLSWKKHVTNDDIKLGH
VVLLLKDDVSSSVCSILEHCVKTNKLNTDRIHSLQTDNERLSQERTMALKRLEKCVAAKE
EMEKDLYSKFVAVLNSKKEKLRELKENRSSEVSEEITSSPPPKPSTSRASSIRNGRSRKK
KMVVKDDDEMSEEMNTDEEETPPPKRQRKAATGNNMSDGDTSLVLEDDVSTSTVVTRPAR
QRAGTKKATPSKPVLPKVTRNHSNESGSSMKTRMSKSSSNNSNIDAEDLFSDL
NT seq
1062 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctaaaccatcactgataatgagtaagaaagtattaagtaaactatctgtaagt
ggaagtaagaagaattattttttattatcaaccacaacagaagacaaagaagatggtttt
caacttattttatcaaatggagaaagtgtttgggaaggagaattatcagcagatgaaata
gacaaacagaggaagaaattaaagatggattttaacacatattatatacagacagagaaa
gcctttactcgttcagatgaagacaagaattatgaatatcaaatcaaaatcaatcaagat
gatacagctaatttatcatggaagaaacatgttactaatgatgatatcaagcttggacat
gttgtattattattgaaagatgatgtttcatctagtgtttgttctatattagaacattgt
gtgaagaccaataagttgaatactgacagaatccactcattacaaacagataatgaaaga
ttatcacaggagagaaccatggctttaaagagactagagaaatgtgtagctgctaaagaa
gaaatggagaaagatctatattctaagtttgtagctgtgttaaacagtaaaaaagaaaaa
ttaagggaattaaaagaaaacagaagttctgaagtttcagaagaaattacctcctcacca
ccaccaaaaccttcaacttcaagagctagttctattagaaatggaagatcaagaaagaag
aagatggtggtgaaggatgatgatgaaatgagtgaagagatgaatacagatgaagaagag
actccaccaccaaaacgtcaacgtaaagcagccactggtaacaatatgtctgatggtgat
acttcattggttttagaagatgatgtctctacatctacagtagttacaagacctgctaga
cagagagctggaacaaagaaagctaccccatcaaaacctgttctacccaaagtcacaaga
aatcactctaatgaaagtggaagttcaatgaaaactcgaatgagtaaaagtagttcaaac
aactccaatatagatgctgaagatttatttagtgatttatag
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