KEGG   Lottia gigantea (owl limpet): LOTGIDRAFT_167341
Entry
LOTGIDRAFT_167341 CDS       T03273                                 
Name
(RefSeq) hypothetical protein
  KO
K12624  U6 snRNA-associated Sm-like protein LSm5
Organism
lgi  Lottia gigantea (owl limpet)
Pathway
lgi03018  RNA degradation
lgi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lgi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    LOTGIDRAFT_167341
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LOTGIDRAFT_167341
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lgi03019]
    LOTGIDRAFT_167341
   03041 Spliceosome [BR:lgi03041]
    LOTGIDRAFT_167341
Messenger RNA biogenesis [BR:lgi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     LOTGIDRAFT_167341
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     LOTGIDRAFT_167341
Spliceosome [BR:lgi03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    LOTGIDRAFT_167341
SSDB
Motif
Pfam: LSM SM-ATX LSM14
Other DBs
NCBI-GeneID: 20240595
NCBI-ProteinID: XP_009063067
JGI: 167341
UniProt: V3ZPM3
LinkDB
Position
Unknown
AA seq 90 aa
MAATFTSPSQLLPLELVDKCIGSRIHIIMKNDIEIVGTFWGFDDYVNMVLEDVSEFESTP
EGRRVTRIDKILLNGNNITMLVPGGEGPET
NT seq 273 nt   +upstreamnt  +downstreamnt
atggcggctacatttacgagtccttctcaattgctgcctttagaattggtagataaatgt
ataggatctagaattcatataattatgaagaatgacattgaaatagttggaactttctgg
ggctttgatgattatgtcaatatggtgttagaagatgtatctgaattcgaaagtacacct
gagggtcgaagagtgaccagaatagataaaattttattaaatggaaataatattacaatg
ttggttcctggtggtgaaggtccagaaacataa

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