Lottia gigantea (owl limpet): LOTGIDRAFT_179956
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Entry
LOTGIDRAFT_179956 CDS
T03273
Name
(RefSeq) hypothetical protein
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
lgi
Lottia gigantea (owl limpet)
Pathway
lgi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lgi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LOTGIDRAFT_179956
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lgi03019
]
LOTGIDRAFT_179956
Messenger RNA biogenesis [BR:
lgi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
LOTGIDRAFT_179956
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
LOTGIDRAFT_179956
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Poty_PP
Motif
Other DBs
NCBI-GeneID:
20244373
NCBI-ProteinID:
XP_009067327
JGI:
179956
UniProt:
V3ZDC3
LinkDB
All DBs
Position
Unknown
AA seq
558 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVVEGVDTFEDIWNKQTTANLNQKEKYETDLKREIKKLQRLRDQ
IKTWSASNDIKDKSQLLEHRKLIETQMERFKVVERETKTKAYSKEGLGAASKVDPQTKEK
DEATSWLSKMIEGLNLQLEQFESEIEQLSGPSKKKKSEREDQLESLKSHKDRHQYHIKKL
ELIMRMVDNETLPVERIKSIKEDVEYYVESNQDPDYEENEFIYDDLQLDDISLLASSPPS
DDIILTGTPTSTNSSSPSPSPSVIANHSMTSSTTTNGTIVSSSSSVSLLTSSGNPSVPSA
PSPLYSSSMFSALPNNSISNSMVNTVQSINSDLPVMNGPSSAGNMFKETSSLKSMAQQAI
KNAGLENSQQQQQQQSMLPSLQPPSASQSQQQTTTIQLNPLLGVAPLGPVPLVKDHLYQL
TMLDAAYQHLPHPSDSERLRHYLPRCPFPTPSYYYQLPPPHADSVDFFTRLSTETLFFIF
YYMEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITEDFEQGTYLFFDYEKWGQR
KKEGFTFEYRYLEDRDLN
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atggctgataagcgtaagcttcaaggtgaaattgacagatgcctgaaaaaagtagttgaa
ggtgtcgatacatttgaagacatatggaacaaacaaactactgcaaatttaaatcaaaaa
gagaagtatgaaactgacttgaagagagaaattaagaaactacagcgattacgtgaccag
ataaaaacatggtcggcaagcaacgatatcaaggacaagagtcaactcttggagcaccgg
aaacttatagaaacgcaaatggaacgtttcaaagtagtggagcgagaaacaaagaccaaa
gcttattcaaaggaaggcttaggtgctgcctccaaagttgaccctcaaactaaagaaaaa
gatgaagcaacttcttggttatcaaaaatgattgaagggttgaatttacagctagagcaa
tttgagagtgaaattgaacaactttctggtccatccaagaaaaagaaatcggaacgagag
gatcagctagaaagtttaaaatctcataaagatcgtcatcaatatcacataaaaaaatta
gaactaatcatgagaatggttgataatgaaacgttacctgttgaacgaattaaaagtata
aaagaagatgtagagtattatgtagagagtaatcaagacccagattatgaagaaaatgag
tttatttatgatgacttacagttagatgacattagcctgttagcatcatcaccaccatct
gatgacatcatacttactggaactccaacctctacaaactctagctcaccatcacctagt
ccgagtgttatagccaatcattccatgactagttcaacgacgacaaatggcaccattgtt
tcttcaagtagttctgtctccttattaacctcctcgggaaatccttcggtgccgtctgct
ccctcaccgttgtattcctccagtatgttttcggcgttacctaataactctatcagtaat
tcaatggtgaatacagtccagtctataaatagtgatttgccagtgatgaatggtccttct
agtgctggcaatatgtttaaagagacgtcttctttgaagtcgatggcacaacaagctatt
aagaacgcaggtcttgagaattcacaacaacaacaacaacaacagtctatgttgccctca
ttacaaccgccatcggcatctcaatcacagcaacaaacaacaaccatacagttaaatcct
ttattaggggtagcaccactaggtcccgttccactagtaaaagatcatttgtatcagttg
acaatgttagatgctgcctatcaacatttgcctcatccttcagattcagagagattacgg
cattacctgccacgctgtccttttccaacaccatcatattattatcaactcccgccaccc
cacgcagattctgtcgatttctttactagattgtcaacagagacactcttctttatattt
tactatatggagggtacaaaggctcaatatttggcagctaaagcattaaagaagcaatcg
tggcggttccacacgaagtacatgatgtggtttcagcggcatgaagaaccaaaaacaatt
acggaagactttgagcagggcacatacctttttttcgattacgagaaatggggccaacgg
aaaaaggagggttttactttcgaataccgatatttagaagatcgggacttaaactag
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integrated database retrieval system