KEGG   Lottia gigantea (owl limpet): LOTGIDRAFT_195007
Entry
LOTGIDRAFT_195007 CDS       T03273                                 
Name
(RefSeq) hypothetical protein
  KO
K07573  exosome complex component CSL4
Organism
lgi  Lottia gigantea (owl limpet)
Pathway
lgi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lgi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LOTGIDRAFT_195007
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lgi03019]
    LOTGIDRAFT_195007
Messenger RNA biogenesis [BR:lgi03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     LOTGIDRAFT_195007
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     LOTGIDRAFT_195007
SSDB
Motif
Pfam: EXOSC1 ECR1_N RRP4_S1 ECR1_N_2
Other DBs
NCBI-GeneID: 20245104
NCBI-ProteinID: XP_009062793
JGI: 195007
UniProt: V3ZVE0
LinkDB
Position
Unknown
AA seq 196 aa
MATSTICVPGQRILRTDDDHISGNGTYTRNGYIYSTLVGYVFTQTNDDGKTIVEVRSSKT
QNVVPSEDDIVTARVTNVNARFCKCSILSIGKTKLQEPFRGTLRKEDVRATEKDKVEMYK
CFRPGDIIAAQVLSLGDAQSYLLSTSENELGVVIATSETGGTMVPISWCKMQCTKTLSEE
FRKVAKVQPQFIEYSS
NT seq 591 nt   +upstreamnt  +downstreamnt
atggcaacttccacgatttgtgtgcccggtcagcgtatattgagaacagatgatgatcat
atcagtggaaatggaacttatacaagaaatggttatatatattctactttagttggttat
gtttttactcagactaatgatgatggaaagacaattgttgaagtcagatcatccaaaaca
caaaacgtagttcctagtgaagatgatatagttactgccagggtcaccaatgtaaatgcc
agattttgtaaatgttctattttgagtattggcaaaaccaaattacaagaaccctttcgt
ggaactttgagaaaagaagatgtgagagcaacagaaaaagacaaggttgaaatgtataaa
tgttttagacctggtgatatcatagcagctcaagttttatctttaggtgatgcacaatct
tatttactgagtaccagtgaaaatgaattaggagttgtcatagcaactagtgaaacaggt
ggtactatggttcctataagttggtgtaaaatgcaatgtactaaaactttatcagaagaa
ttcagaaaagttgccaaagttcaaccacagtttatagaatattcctcttga

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