Lottia gigantea (owl limpet): LOTGIDRAFT_195007
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Entry
LOTGIDRAFT_195007 CDS
T03273
Name
(RefSeq) hypothetical protein
KO
K07573
exosome complex component CSL4
Organism
lgi
Lottia gigantea (owl limpet)
Pathway
lgi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lgi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LOTGIDRAFT_195007
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lgi03019
]
LOTGIDRAFT_195007
Messenger RNA biogenesis [BR:
lgi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
LOTGIDRAFT_195007
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
LOTGIDRAFT_195007
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
RRP4_S1
ECR1_N_2
Motif
Other DBs
NCBI-GeneID:
20245104
NCBI-ProteinID:
XP_009062793
JGI:
195007
UniProt:
V3ZVE0
LinkDB
All DBs
Position
Unknown
AA seq
196 aa
AA seq
DB search
MATSTICVPGQRILRTDDDHISGNGTYTRNGYIYSTLVGYVFTQTNDDGKTIVEVRSSKT
QNVVPSEDDIVTARVTNVNARFCKCSILSIGKTKLQEPFRGTLRKEDVRATEKDKVEMYK
CFRPGDIIAAQVLSLGDAQSYLLSTSENELGVVIATSETGGTMVPISWCKMQCTKTLSEE
FRKVAKVQPQFIEYSS
NT seq
591 nt
NT seq
+upstream
nt +downstream
nt
atggcaacttccacgatttgtgtgcccggtcagcgtatattgagaacagatgatgatcat
atcagtggaaatggaacttatacaagaaatggttatatatattctactttagttggttat
gtttttactcagactaatgatgatggaaagacaattgttgaagtcagatcatccaaaaca
caaaacgtagttcctagtgaagatgatatagttactgccagggtcaccaatgtaaatgcc
agattttgtaaatgttctattttgagtattggcaaaaccaaattacaagaaccctttcgt
ggaactttgagaaaagaagatgtgagagcaacagaaaaagacaaggttgaaatgtataaa
tgttttagacctggtgatatcatagcagctcaagttttatctttaggtgatgcacaatct
tatttactgagtaccagtgaaaatgaattaggagttgtcatagcaactagtgaaacaggt
ggtactatggttcctataagttggtgtaaaatgcaatgtactaaaactttatcagaagaa
ttcagaaaagttgccaaagttcaaccacagtttatagaatattcctcttga
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