KEGG   Lottia gigantea (owl limpet): LOTGIDRAFT_198206
Entry
LOTGIDRAFT_198206 CDS       T03273                                 
Name
(RefSeq) hypothetical protein
  KO
K10755  replication factor C subunit 2/4
Organism
lgi  Lottia gigantea (owl limpet)
Pathway
lgi03030  DNA replication
lgi03410  Base excision repair
lgi03420  Nucleotide excision repair
lgi03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:lgi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    LOTGIDRAFT_198206
   03410 Base excision repair
    LOTGIDRAFT_198206
   03420 Nucleotide excision repair
    LOTGIDRAFT_198206
   03430 Mismatch repair
    LOTGIDRAFT_198206
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:lgi03032]
    LOTGIDRAFT_198206
   03036 Chromosome and associated proteins [BR:lgi03036]
    LOTGIDRAFT_198206
   03400 DNA repair and recombination proteins [BR:lgi03400]
    LOTGIDRAFT_198206
DNA replication proteins [BR:lgi03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    LOTGIDRAFT_198206
  DNA Replication Termination Factors
   ELG1-RFC complex
    LOTGIDRAFT_198206
Chromosome and associated proteins [BR:lgi03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    LOTGIDRAFT_198206
DNA repair and recombination proteins [BR:lgi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     LOTGIDRAFT_198206
  Check point factors
   HRAD17(Rad24)-RFC complex
    LOTGIDRAFT_198206
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid AAA_assoc_2 Rad17 AAA_11 AAA_22 AAA_24 AAA_16 AAA_30 Mg_chelatase SLFN-g3_helicase AAA_14 Gp44_lid AAA_5 AAA_19 RuvB_N DUF815 AAA_28 ATPase_2 AAA_7 AAA_3 Cdc6_lid Effector_1
Other DBs
NCBI-GeneID: 20245290
NCBI-ProteinID: XP_009067161
JGI: 198206
UniProt: V3YVV6
LinkDB
Position
Unknown
AA seq 360 aa
MQAFLKGGTTSLQKTKDKASSSSKDTKDTKKHIPWVERYRPRCVDDVAFQDEVVLVLKKS
LTGSDLPNLLFYGPPGTGKTSTILAAARELYGPELMRSRILELNASDERGIDVVRVKVKK
FSQQTASGTRSDGKPCPPFKIVILDEADSMTSHAQAALRRTMEKQSKTTRFCLICNYVSR
IIEPITSRCAKFRFKPLAENVLSDRLKLISEKENITCSDEVIKALIDTSEGDLRKAITYL
QSASSLHKDDTDITVEDICEIAGVIPTDNIDEVLKICHSDSYEKLDKIIKTMINNGYAAT
QVINQIHDRIVISEELTDTQKSVICEKIALVDKCLLDGADEYLQLMALFSVIMTQICHGK
NT seq 1083 nt   +upstreamnt  +downstreamnt
atgcaggcatttttgaaaggaggaaccacttctttacagaagactaaagacaaagccagt
agttctagtaaagatacaaaggacaccaagaaacacataccatgggtggaaagatatcga
ccaagatgtgtagatgatgttgcttttcaagatgaagtggttttagttctgaagaaatct
ttgacaggttctgatttacctaatctgttattctatggtccacctggtactggtaaaaca
tcaactatactcgctgctgctagagaattatatgggcctgagttaatgagatctaggata
ctagagttaaacgcctctgatgaaagaggtatagatgttgtcagagttaaagtcaagaaa
ttctctcaacaaacagcttcaggcactagatcagatggtaaaccatgtcccccatttaaa
atagttatattagatgaagctgactccatgacatcacatgcacaggcagccttgagacga
acaatggagaaacagtctaaaactacgagattctgtttaatttgtaattatgttagccgt
attatagagcctatcacatcacgatgtgctaaattcagatttaaaccactagctgaaaat
gttcttagtgatagattgaaacttattagtgagaaggagaacattacctgtagtgatgag
gtgatcaaggcattaatcgatacatcagaaggtgatttaagaaaagctataacttattta
caaagtgcttcgtccttacataaagatgatacagatataacagttgaagatatctgtgaa
atagctggggttatacctacagataatatagatgaagttttgaaaatttgtcattctgat
tcctatgaaaaattggataaaattattaagactatgattaataatggatatgctgctaca
caagttataaatcaaatacacgatagaatagttatatccgaagaacttacggacactcaa
aaatctgtcatctgtgaaaaaatagcgcttgtggataaatgtctactagatggagcagat
gaatatcttcaacttatggctttattcagtgtcataatgactcaaatatgccatggcaaa
tga

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