Lottia gigantea (owl limpet): LOTGIDRAFT_199286
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Entry
LOTGIDRAFT_199286 CDS
T03273
Name
(RefSeq) hypothetical protein
KO
K13126
polyadenylate-binding protein
Organism
lgi
Lottia gigantea (owl limpet)
Pathway
lgi03015
mRNA surveillance pathway
lgi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lgi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
LOTGIDRAFT_199286
09123 Folding, sorting and degradation
03018 RNA degradation
LOTGIDRAFT_199286
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lgi03019
]
LOTGIDRAFT_199286
03041 Spliceosome [BR:
lgi03041
]
LOTGIDRAFT_199286
Messenger RNA biogenesis [BR:
lgi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
LOTGIDRAFT_199286
mRNA cycle factors
Stress granule specific factors
LOTGIDRAFT_199286
Spliceosome [BR:
lgi03041
]
Complex C
Other components
Complex C specific factors
LOTGIDRAFT_199286
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
SET_assoc
RRM_7
RRM_10
RRM_5
RRM_3
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
20245343
NCBI-ProteinID:
XP_009045955
JGI:
199286
UniProt:
V4BBJ3
LinkDB
All DBs
Position
Unknown
AA seq
553 aa
AA seq
DB search
MATLYVGDLHPDVTESMLFSKFSTAGPVSSIRVCQDIATRRSLGYAYVNFSQPSDAERAL
DTMNFDTILETPIRIMWLEGDPSQRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCK
IAADEQGSKGYGFVYFETEEAAKQAIEKVNGMLLNNKKVYVGKFIPRRERLAMMGDKAKR
YNNVYIKNFGEEFDDDTLKTEMEKYGKVISAKVMTDATNQSRGFGFVSFEDPEQAERCVD
AMNGQEMNGKTLYVGRAQKRAERQAELKEKFERLKIERINRYQGVNLYVKNLDDCIDDEK
LRKAFSKFGTITSAKVIGDGHRSKGFGFVCFSSPEEATKAVTVMNGFIIASKPLYVALAQ
GKEERKQQLASQYMQRMTTMRQSMQNGQFSQIFQPSAGAGYFVPSMPHAARGYFTQAQMP
QVQASPRWQTPFRQPQPQPGEFSSKFVLSLLALGLGNRAPASVVIPGQDPLTTSMLAAAP
PQKQKQMLGERMFPLINRMHQDLAGKITGMLLEIDNSELLHMLESQESLKGKVEEAVAVL
QAHQAKEATTKRE
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atggccaccctgtatgtgggtgatttacatccagatgtcaccgagtctatgttgttttcc
aaattctctactgcaggacctgtgtcgtctattcgagtatgtcaagatatcgctactcga
cgatctttgggctatgcgtatgtcaacttttctcagccttccgatgcggagagagctctc
gataccatgaacttcgacaccattttagagacaccaatccgtattatgtggttggaggga
gatccttctcaacgtaaatctggtgtaggaaatgtctttatcaagaatttagataaaagt
attgataataaggctttgtacgacactttctcagcttttggtaacatcctttcttgtaag
attgctgcagatgaacagggatctaaggggtatggatttgtctattttgaaacggaagaa
gctgctaaacaggctattgagaaagtgaatggcatgttgttgaataacaagaaagtctat
gtcggaaagttcatcccacgtcgggaaagattagccatgatgggagacaaagccaagaga
tacaacaatgtctacatcaaaaactttggtgaagaattcgatgacgatactctgaagact
gaaatggaaaaatacggaaaagtcatcagtgctaaggtcatgactgatgctaccaatcaa
tctcgagggtttggcttcgtcagttttgaagatcccgagcaggctgaaaggtgtgtggat
gctatgaatggacaagaaatgaatggtaaaacattgtacgttggtcgagcccagaaacgt
gctgaacgtcaggctgaattgaaagagaaattcgaacgtttgaaaattgagagaattaat
cgttatcaaggcgtgaatctttacgttaaaaatcttgatgattgtattgatgatgaaaaa
ttgagaaaggctttctccaagttcggaaccattactagtgccaaggtcataggtgatgga
caccgctccaaaggttttggatttgtgtgcttcagttccccagaggaggcaacgaaggct
gttacagtcatgaatggttttatcattgcttctaaaccattgtacgtagctctggctcaa
ggaaaggaggaacgtaaacaacagttggcttcacagtatatgcaacgcatgaccactatg
agacaatctatgcaaaatggtcaattcagtcagatattccaaccaagtgcaggagctggg
tattttgtaccctccatgccccatgctgctagggggtacttcacacaagctcagatgcca
caagttcaagctagtcccagatggcagactccatttagacaacctcaacctcaacctggt
gagttttcttcaaagttcgttttgagcttgctagcattgggcttggggaatcgtgctcca
gcatcagttgtgatacctggacaagaccctctaactacctccatgttggctgctgctcca
ccacaaaagcagaaacagatgttaggagagaggatgttccccttgattaacagaatgcac
caggatttggctggtaagattactggaatgttgttggagattgataattctgagttgttg
cacatgttggaatcgcaggagtccctcaagggcaaggtggaagaagctgttgccgtactt
caagctcaccaagccaaggaagccaccaccaaaagagagtaa
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