Lottia gigantea (owl limpet): LOTGIDRAFT_206726
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Entry
LOTGIDRAFT_206726 CDS
T03273
Name
(RefSeq) hypothetical protein
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
lgi
Lottia gigantea (owl limpet)
Pathway
lgi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lgi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
LOTGIDRAFT_206726
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lgi03041
]
LOTGIDRAFT_206726
03009 Ribosome biogenesis [BR:
lgi03009
]
LOTGIDRAFT_206726
Enzymes [BR:
lgi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LOTGIDRAFT_206726
Spliceosome [BR:
lgi03041
]
Complex A
U2 snRNP components
U2 related factors
LOTGIDRAFT_206726
Complex B
LOTGIDRAFT_206726
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
LOTGIDRAFT_206726
Ribosome biogenesis [BR:
lgi03009
]
Eukaryotic type
90S particles
Helicases
LOTGIDRAFT_206726
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
nSTAND3
SRP54
ResIII
T2SSE
NACHT
AAA_7
AAA_29
AAA_30
TsaE
HMUD2
AAA_25
Motif
Other DBs
NCBI-GeneID:
20245934
NCBI-ProteinID:
XP_009058973
JGI:
206726
UniProt:
V4A5L8
LinkDB
All DBs
Position
Unknown
AA seq
681 aa
AA seq
DB search
MNPFTGLPFTPRYYQLYNKRSQLPVWEYKDKFMKMVTDHQMIVLVGETGSGKTTQIPQWC
LEWVRARYNKKGVACTQPRRVAAMSVAQRVSEEMDIGLGQEVGYSIRFEDCTSSKTVLKY
MTDGMLLREGMSDPLLEAYGVIMLDEAHERTLATDILMGLLKEVARQRSDLKIIVMSATL
DAGKFQTYFDNAPLMSVPGRTHPVEIFYTPEPERDYLEAAIRTVMQIHMCEEQEGDLLLF
LTGQEEIDEACKRIKREADNLGAEIGELKCIPLYSTLPPNLQQRIFEPPPPKKPNGAVGR
KIVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVTAISKASAQQRAGRAGR
TRPGKCFRLYTEKAYKNEMQQNTYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPET
LMRALELLNYLAALDDDGELTELGSMMAEFPLDPQLAKMVIASCDFSCSNEILSITAMLS
VPQCFVRPSEVKKAADEAKMRFAHIDGDHLTLLNVYHAFKQNHEDNQWCFDNFVNYRSLK
SADNVRQQLARIMDRFSLRRASTDFNSRDYYINIRKALVSGFFMQVAHLERTGHYLTAKD
NQIVQLHPSTVLDHKPEWVIYNEFVLTTKNYIRTVTDIKPEWLIKIAPQYYDMSNFPQSE
AKRILERIIAKYQNRANSEQQ
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgaatccttttacagggttgccgtttaccccacggtattaccaattgtataataaacga
agccagctgcctgtctgggaatataaagataagtttatgaagatggtgacagatcatcag
atgatagtactggttggtgagactggctctggtaaaactacacagattcctcaatggtgt
ttagaatgggtgagagctaggtataataaaaagggtgtggcctgtacccaaccacgtcga
gtagctgccatgtctgtggctcagcgtgtgtctgaggaaatggatatcggtctgggacaa
gaagttggatattctattaggtttgaagactgtacatcttctaaaactgttctcaaatat
atgacagatggtatgttgttacgagaaggtatgtctgaccctctattagaagcctatggt
gtcatcatgttggatgaagcccatgaacgtactctagccactgatatattgatgggttta
ttgaaggaagtagctagacaaagatctgatttaaaaattattgttatgagtgctactctt
gatgctggaaaatttcagacgtattttgataacgccccgttaatgagtgtgcctggtaga
actcaccctgtagagatattctatacaccagaaccagaacgtgactacctggaggcagcc
attagaactgtcatgcagattcatatgtgtgaagaacaggaaggagatctcttgttattt
ttaactggtcaggaggaaattgacgaggcttgtaaaagaataaaaagagaagcggataat
ttaggagccgaaattggagaattaaaatgtattccgttatattcgacactacctcctaat
ttacaacagcgtatatttgaacccccaccccctaagaaacctaacggagctgttggtaga
aagattgtagtatctactaatattgccgagacctcgttgactattgatggagtggtgttt
gtcattgatccaggctttgccaaacaaaaggtatacaatcccagaatccgagtggagtcg
ctactggttacagctattagtaaagctagtgctcaacagagggcaggtcgagctggtaga
acgcggccaggaaaatgtttccgactgtatacagagaaagcgtataaaaacgagatgcaa
cagaatacctatcctgagatattaagatctaatttaggatcagttgtacttcagttgaag
aaacttggtattgatgatttggttcattttgacttcatggaccctccagcgccagaaacg
ttaatgagagcattagaattattgaattacctggcagctttagatgatgatggagaatta
acagaattaggatccatgatggctgaattccctctagatcctcagttagctaagatggtg
atagcaagctgtgatttcagttgttcaaatgaaattctttctatcacagccatgttgtca
gtcccacagtgttttgtcagaccgtcggaggtgaagaaggctgcagatgaagcgaagatg
aggtttgcccatattgatggtgatcatttgactcttctcaacgtttaccatgcatttaaa
cagaatcatgaagataaccaatggtgttttgataattttgtgaactaccgatctttaaag
agtgctgataatgtacgacaacagttagcgaggattatggatcgattcagcctgcgtcga
gccagtactgattttaacagtcgtgattattatattaatattagaaaggctcttgtctcg
ggtttctttatgcaggtggcccatttagaaagaacaggtcattatttaacagctaaagac
aatcagatagtacagttacatccctcgacagttctagaccataaaccagaatgggtgata
tacaatgaatttgtcttgacaactaaaaattatatccgaactgtgacagatattaaacca
gaatggttgattaaaatcgcgcctcaatattacgatatgtccaacttccctcaatctgag
gctaaacgaatattagagagaattatagctaaatatcagaatagagctaactcagaacaa
caataa
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