KEGG   Lottia gigantea (owl limpet): LOTGIDRAFT_209108
Entry
LOTGIDRAFT_209108 CDS       T03273                                 
Name
(RefSeq) hypothetical protein
  KO
K03679  exosome complex component RRP4
Organism
lgi  Lottia gigantea (owl limpet)
Pathway
lgi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lgi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LOTGIDRAFT_209108
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lgi03019]
    LOTGIDRAFT_209108
Messenger RNA biogenesis [BR:lgi03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     LOTGIDRAFT_209108
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     LOTGIDRAFT_209108
SSDB
Motif
Pfam: RRP4_S1 ECR1_N KH_6 ECR1_N_2
Other DBs
NCBI-GeneID: 20246119
NCBI-ProteinID: XP_009051745
JGI: 209108
UniProt: V4AST0
LinkDB
Position
Unknown
AA seq 294 aa
MATVDIRLVSTRGIKKKSDHVDEIKNLVTPGDVITSDSGFMRGHGTFMEEGKLHASVAGV
VEHVNKLICVKPLKTRYNGEIGDVVIGRIIEVCQRRWKVETHSKLNSVLMLSSVNLPGGE
LRRRSEEDEKLMRHYLKEGDLISAEVQNVMGDGCLSLHTRSLKYGKLGQGTLLSISPSLI
KRRKTHFHNLPCGASVILGNNGYIWITPNIDDESQNTGGYEQNLQPVPQTDREVVARLRN
CILALAANHMIIYDTNIMYAFEASISFTVKELLKPEVISEMIDLVQQRIDMEGT
NT seq 885 nt   +upstreamnt  +downstreamnt
atggctactgttgatattagattggtttccacacgtgggattaaaaagaaaagtgatcat
gtagatgaaattaagaatttggtgacacctggagatgtgatcacctctgattccggcttc
atgagaggtcatggaacttttatggaagaaggaaaacttcatgcctcagtggctggagtt
gtagaacatgtcaataaactgatttgtgtaaagcctttaaaaacacgctacaatggagag
ataggtgatgttgtaattgggcgaatcattgaagtgtgtcagcgaagatggaaagttgaa
actcattccaaattaaattcagtcttgatgttgtcgtcagttaatttaccaggaggagaa
ttgagaaggaggtccgaggaggatgaaaaactgatgaggcattatttaaaagaaggagac
ttaatcagtgcagaggttcaaaatgtaatgggagatggttgtctatcgttacatactcgt
agtttgaagtatggtaaattaggtcaggggacattattatcaatatcaccctcgctaatt
aaaagaagaaaaactcatttccataatctaccttgtggtgcaagtgttatcttgggcaat
aacgggtatatctggattacacccaatattgatgacgaaagccaaaatacaggaggatat
gaacagaatttacaaccagtaccgcagactgatagagaagttgtagccagattaagaaac
tgtattttagcgctagctgccaatcatatgattatatatgatactaatattatgtatgca
tttgaagcttcaatatcatttactgttaaagaacttttgaaacctgaagtgattagtgaa
atgattgatttggtacaacagagaattgatatggaaggcacatag

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