Lottia gigantea (owl limpet): LOTGIDRAFT_209108
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Entry
LOTGIDRAFT_209108 CDS
T03273
Name
(RefSeq) hypothetical protein
KO
K03679
exosome complex component RRP4
Organism
lgi
Lottia gigantea (owl limpet)
Pathway
lgi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lgi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LOTGIDRAFT_209108
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lgi03019
]
LOTGIDRAFT_209108
Messenger RNA biogenesis [BR:
lgi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
LOTGIDRAFT_209108
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
LOTGIDRAFT_209108
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRP4_S1
ECR1_N
KH_6
ECR1_N_2
Motif
Other DBs
NCBI-GeneID:
20246119
NCBI-ProteinID:
XP_009051745
JGI:
209108
UniProt:
V4AST0
LinkDB
All DBs
Position
Unknown
AA seq
294 aa
AA seq
DB search
MATVDIRLVSTRGIKKKSDHVDEIKNLVTPGDVITSDSGFMRGHGTFMEEGKLHASVAGV
VEHVNKLICVKPLKTRYNGEIGDVVIGRIIEVCQRRWKVETHSKLNSVLMLSSVNLPGGE
LRRRSEEDEKLMRHYLKEGDLISAEVQNVMGDGCLSLHTRSLKYGKLGQGTLLSISPSLI
KRRKTHFHNLPCGASVILGNNGYIWITPNIDDESQNTGGYEQNLQPVPQTDREVVARLRN
CILALAANHMIIYDTNIMYAFEASISFTVKELLKPEVISEMIDLVQQRIDMEGT
NT seq
885 nt
NT seq
+upstream
nt +downstream
nt
atggctactgttgatattagattggtttccacacgtgggattaaaaagaaaagtgatcat
gtagatgaaattaagaatttggtgacacctggagatgtgatcacctctgattccggcttc
atgagaggtcatggaacttttatggaagaaggaaaacttcatgcctcagtggctggagtt
gtagaacatgtcaataaactgatttgtgtaaagcctttaaaaacacgctacaatggagag
ataggtgatgttgtaattgggcgaatcattgaagtgtgtcagcgaagatggaaagttgaa
actcattccaaattaaattcagtcttgatgttgtcgtcagttaatttaccaggaggagaa
ttgagaaggaggtccgaggaggatgaaaaactgatgaggcattatttaaaagaaggagac
ttaatcagtgcagaggttcaaaatgtaatgggagatggttgtctatcgttacatactcgt
agtttgaagtatggtaaattaggtcaggggacattattatcaatatcaccctcgctaatt
aaaagaagaaaaactcatttccataatctaccttgtggtgcaagtgttatcttgggcaat
aacgggtatatctggattacacccaatattgatgacgaaagccaaaatacaggaggatat
gaacagaatttacaaccagtaccgcagactgatagagaagttgtagccagattaagaaac
tgtattttagcgctagctgccaatcatatgattatatatgatactaatattatgtatgca
tttgaagcttcaatatcatttactgttaaagaacttttgaaacctgaagtgattagtgaa
atgattgatttggtacaacagagaattgatatggaaggcacatag
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