Lottia gigantea (owl limpet): LOTGIDRAFT_216477
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Entry
LOTGIDRAFT_216477 CDS
T03273
Name
(RefSeq) hypothetical protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
lgi
Lottia gigantea (owl limpet)
Pathway
lgi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lgi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
LOTGIDRAFT_216477
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lgi03041
]
LOTGIDRAFT_216477
Spliceosome [BR:
lgi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
LOTGIDRAFT_216477
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_THOC3
Beta-prop_WDR5
WD40_Prp19
WD40
Beta-prop_WDR3_1st
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
WD40_Gbeta
EIF3I
WDR55
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR90_POC16_2nd
PRP4
Beta-prop_Aladin
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
Beta-prop_EML
ANAPC4_WD40
Beta-prop_EIPR1
Beta-prop_DCAF4
WDR90_beta-prop_4th
Beta-prop_TEP1_C
NBCH_WD40
Beta-prop_RIG_2nd
Beta-prop_Vps41
WD_LRWD1
Beta-prop_IFT122_1st
Ge1_WD40
WD40_RFWD3
Beta-prop_Nup120_160
Beta-prop_SPT8
WD40_like
Beta-prop_IFT140_1st
cas_Cpf1_2nd
Motif
Other DBs
NCBI-GeneID:
20246638
NCBI-ProteinID:
XP_009056512
JGI:
216477
UniProt:
V4ACK7
LinkDB
All DBs
Position
Unknown
AA seq
520 aa
AA seq
DB search
MSEMSDDDEDVIHIIKKDKVIQYGSLEEKERQRLANTGSSGSLANDAIEAGKASGNINIT
SESNQFEIDDDAGQAEALAEFNKRKRARQIQVSTDDFEVKARLRENGEPICLFGEGPAER
RERLRQILAQIGADAIKKRAEEKAAEAKKKEEENVTWYHEGSESLKEARLWLANYSLPRA
KERVTKQKLEKNIPATQQNAKLQELHKKIRSVTNDCSQIGDNRPLSFCQFSPNSKLLAVS
SWSGLCKIWSIPECEMVRELRGSHNCNVGAIVFHPQATLSLDDNACCMASCGQDGTVKLW
NLVSEEPIADIEGHSPYRVSRLAYHPSGRFLGTCCFDNSWRLWDLEAQDEVLHQEGHSKP
VYDISFQCDGALAATCGLDAYSRVWDLRSGRCVMFLEGHLKSVLAIDFSPDGYHVATGSE
DNMSKIWDLRQRKCVYTIPAHTNLVSYVKFQPQHGNYLVTASYDSTAKIWAHPTWTPLRT
LAGHEGKIMGLDISPDLKHMATCSFDRTFKIWISETSETL
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaatgtcagatgatgatgaagatgttatacatattattaaaaaagataaagtt
atacagtatggtagtttagaagagaaagaaagacaaagattagctaatactgggtcaagt
ggttcattggctaatgatgctattgaagcagggaaagcatcaggcaatatcaacataaca
tcagagagtaaccaatttgaaatagatgatgatgcaggtcaagctgaagctttagcagaa
tttaataaaagaaaaagagcacgtcaaattcaagtgtccacagatgattttgaagttaaa
gcaagattaagggaaaatggagaaccaatatgtttatttggtgaaggaccagcagaaaga
agagaacgtcttcgtcagattttagctcagattggtgcagatgcaataaagaaaagggca
gaagagaaagctgctgaggctaaaaagaaagaagaggaaaatgtaacctggtatcatgaa
ggatctgaaagtttaaaagaggcaagactttggcttgctaattattcactaccccgtgct
aaggagagggtcacaaaacaaaaattagagaaaaatataccagcaacacaacaaaacgcc
aagttacaagaattacataaaaagattaggtcggttaccaatgattgtagtcaaatagga
gacaatagacctctatctttctgtcagtttagtcccaattctaaattattagcagtttca
tcttggtcaggattatgtaaaatctggtctataccagaatgtgaaatggttagagaactg
agaggtagtcacaattgtaatgttggagctatagtatttcatcctcaagccacattaagt
ttagatgataatgcttgttgtatggcatcatgtggacaagatggtactgtcaaactctgg
aaccttgtcagtgaagaacctattgccgatattgaaggtcattcaccatatagagtatcg
cgtctagcttatcatccctctggaagatttcttggtacatgctgttttgataattcatgg
agattatgggatttagaagctcaagatgaagtattacatcaagaaggtcatagtaaacct
gtttatgatatatcatttcaatgtgatggggcattagcagctacttgtggattagatgca
tacagtagagtttgggatttgagatcaggtagatgtgtaatgtttttagaaggtcatctc
aaatctgtattggcaatagattttagtccagatgggtaccatgttgctacaggcagtgaa
gataatatgagtaaaatatgggatttacgacaaagaaaatgtgtatataccatcccagct
catactaatcttgtatcttatgttaaattccaaccacaacatggtaattatttagtaaca
gcatcctatgatagtactgctaagatctgggctcatccaacatggacacctttaagaaca
ttagctggtcatgaaggaaaaataatgggtttagatatatcacctgatctgaaacatatg
gcaacatgttcatttgatagaacttttaaaatctggatatcagagacttcggaaacatta
tag
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integrated database retrieval system