KEGG   Lottia gigantea (owl limpet): LOTGIDRAFT_216477
Entry
LOTGIDRAFT_216477 CDS       T03273                                 
Name
(RefSeq) hypothetical protein
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
lgi  Lottia gigantea (owl limpet)
Pathway
lgi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lgi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    LOTGIDRAFT_216477
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:lgi03041]
    LOTGIDRAFT_216477
Spliceosome [BR:lgi03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    LOTGIDRAFT_216477
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 WD40_Prp19 WD40 Beta-prop_WDR3_1st WD40_CDC20-Fz Beta-prop_WDR3_2nd WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_WDR36-Utp21_2nd WD40_Gbeta EIF3I WDR55 Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_WDR90_POC16_2nd PRP4 Beta-prop_Aladin Beta-prop_WDR75_1st WD40_MABP1-WDR62_1st Beta-prop_EML ANAPC4_WD40 Beta-prop_EIPR1 Beta-prop_DCAF4 WDR90_beta-prop_4th Beta-prop_TEP1_C NBCH_WD40 Beta-prop_RIG_2nd Beta-prop_Vps41 WD_LRWD1 Beta-prop_IFT122_1st Ge1_WD40 WD40_RFWD3 Beta-prop_Nup120_160 Beta-prop_SPT8 WD40_like Beta-prop_IFT140_1st cas_Cpf1_2nd
Other DBs
NCBI-GeneID: 20246638
NCBI-ProteinID: XP_009056512
JGI: 216477
UniProt: V4ACK7
LinkDB
Position
Unknown
AA seq 520 aa
MSEMSDDDEDVIHIIKKDKVIQYGSLEEKERQRLANTGSSGSLANDAIEAGKASGNINIT
SESNQFEIDDDAGQAEALAEFNKRKRARQIQVSTDDFEVKARLRENGEPICLFGEGPAER
RERLRQILAQIGADAIKKRAEEKAAEAKKKEEENVTWYHEGSESLKEARLWLANYSLPRA
KERVTKQKLEKNIPATQQNAKLQELHKKIRSVTNDCSQIGDNRPLSFCQFSPNSKLLAVS
SWSGLCKIWSIPECEMVRELRGSHNCNVGAIVFHPQATLSLDDNACCMASCGQDGTVKLW
NLVSEEPIADIEGHSPYRVSRLAYHPSGRFLGTCCFDNSWRLWDLEAQDEVLHQEGHSKP
VYDISFQCDGALAATCGLDAYSRVWDLRSGRCVMFLEGHLKSVLAIDFSPDGYHVATGSE
DNMSKIWDLRQRKCVYTIPAHTNLVSYVKFQPQHGNYLVTASYDSTAKIWAHPTWTPLRT
LAGHEGKIMGLDISPDLKHMATCSFDRTFKIWISETSETL
NT seq 1563 nt   +upstreamnt  +downstreamnt
atgtctgaaatgtcagatgatgatgaagatgttatacatattattaaaaaagataaagtt
atacagtatggtagtttagaagagaaagaaagacaaagattagctaatactgggtcaagt
ggttcattggctaatgatgctattgaagcagggaaagcatcaggcaatatcaacataaca
tcagagagtaaccaatttgaaatagatgatgatgcaggtcaagctgaagctttagcagaa
tttaataaaagaaaaagagcacgtcaaattcaagtgtccacagatgattttgaagttaaa
gcaagattaagggaaaatggagaaccaatatgtttatttggtgaaggaccagcagaaaga
agagaacgtcttcgtcagattttagctcagattggtgcagatgcaataaagaaaagggca
gaagagaaagctgctgaggctaaaaagaaagaagaggaaaatgtaacctggtatcatgaa
ggatctgaaagtttaaaagaggcaagactttggcttgctaattattcactaccccgtgct
aaggagagggtcacaaaacaaaaattagagaaaaatataccagcaacacaacaaaacgcc
aagttacaagaattacataaaaagattaggtcggttaccaatgattgtagtcaaatagga
gacaatagacctctatctttctgtcagtttagtcccaattctaaattattagcagtttca
tcttggtcaggattatgtaaaatctggtctataccagaatgtgaaatggttagagaactg
agaggtagtcacaattgtaatgttggagctatagtatttcatcctcaagccacattaagt
ttagatgataatgcttgttgtatggcatcatgtggacaagatggtactgtcaaactctgg
aaccttgtcagtgaagaacctattgccgatattgaaggtcattcaccatatagagtatcg
cgtctagcttatcatccctctggaagatttcttggtacatgctgttttgataattcatgg
agattatgggatttagaagctcaagatgaagtattacatcaagaaggtcatagtaaacct
gtttatgatatatcatttcaatgtgatggggcattagcagctacttgtggattagatgca
tacagtagagtttgggatttgagatcaggtagatgtgtaatgtttttagaaggtcatctc
aaatctgtattggcaatagattttagtccagatgggtaccatgttgctacaggcagtgaa
gataatatgagtaaaatatgggatttacgacaaagaaaatgtgtatataccatcccagct
catactaatcttgtatcttatgttaaattccaaccacaacatggtaattatttagtaaca
gcatcctatgatagtactgctaagatctgggctcatccaacatggacacctttaagaaca
ttagctggtcatgaaggaaaaataatgggtttagatatatcacctgatctgaaacatatg
gcaacatgttcatttgatagaacttttaaaatctggatatcagagacttcggaaacatta
tag

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