KEGG   Lottia gigantea (owl limpet): LOTGIDRAFT_222366
Entry
LOTGIDRAFT_222366 CDS       T03273                                 
Name
(RefSeq) hypothetical protein
  KO
K12621  U6 snRNA-associated Sm-like protein LSm2
Organism
lgi  Lottia gigantea (owl limpet)
Pathway
lgi03018  RNA degradation
lgi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lgi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    LOTGIDRAFT_222366
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LOTGIDRAFT_222366
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lgi03019]
    LOTGIDRAFT_222366
   03041 Spliceosome [BR:lgi03041]
    LOTGIDRAFT_222366
Messenger RNA biogenesis [BR:lgi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     LOTGIDRAFT_222366
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     LOTGIDRAFT_222366
Spliceosome [BR:lgi03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    LOTGIDRAFT_222366
 Complex C
  U2 snRNP components
    LOTGIDRAFT_222366
SSDB
Motif
Pfam: LSM SM-ATX DYW_deaminase
Other DBs
NCBI-GeneID: 20247051
NCBI-ProteinID: XP_009065532
JGI: 222366
UniProt: V3ZS72
LinkDB
Position
Unknown
AA seq 110 aa
MILWDLLPLLRCQLKLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQFLNIKLTDISVT
DPDKYPHMLSVKNCFIRGSVVRYVQLPADECDTQLLQDAARKEAAQNKSR
NT seq 333 nt   +upstreamnt  +downstreamnt
atgatcttatgggatttattgcctttgcttagatgtcaactcaagttgttttattcgttt
ttcaagtcgttagttggtaaagatgttgttgttgaattaaaaaatgatctcagtatatgt
ggtacattacattctgtagaccagtttttaaatatcaaacttacagacatcagtgtaaca
gatcctgataaatatcctcatatgttatcagtaaagaactgttttattcggggttcagta
gtcagatatgtccagttaccagctgatgaatgtgatacacagttactacaagatgcagca
cggaaagaagctgcacagaacaaatcaagataa

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