Lottia gigantea (owl limpet): LOTGIDRAFT_222366
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Entry
LOTGIDRAFT_222366 CDS
T03273
Name
(RefSeq) hypothetical protein
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
lgi
Lottia gigantea (owl limpet)
Pathway
lgi03018
RNA degradation
lgi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lgi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
LOTGIDRAFT_222366
09123 Folding, sorting and degradation
03018 RNA degradation
LOTGIDRAFT_222366
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lgi03019
]
LOTGIDRAFT_222366
03041 Spliceosome [BR:
lgi03041
]
LOTGIDRAFT_222366
Messenger RNA biogenesis [BR:
lgi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
LOTGIDRAFT_222366
mRNA degradation factors
5'-3' decay
Lsm complex
LOTGIDRAFT_222366
Spliceosome [BR:
lgi03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
LOTGIDRAFT_222366
Complex C
U2 snRNP components
LOTGIDRAFT_222366
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
DYW_deaminase
Motif
Other DBs
NCBI-GeneID:
20247051
NCBI-ProteinID:
XP_009065532
JGI:
222366
UniProt:
V3ZS72
LinkDB
All DBs
Position
Unknown
AA seq
110 aa
AA seq
DB search
MILWDLLPLLRCQLKLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQFLNIKLTDISVT
DPDKYPHMLSVKNCFIRGSVVRYVQLPADECDTQLLQDAARKEAAQNKSR
NT seq
333 nt
NT seq
+upstream
nt +downstream
nt
atgatcttatgggatttattgcctttgcttagatgtcaactcaagttgttttattcgttt
ttcaagtcgttagttggtaaagatgttgttgttgaattaaaaaatgatctcagtatatgt
ggtacattacattctgtagaccagtttttaaatatcaaacttacagacatcagtgtaaca
gatcctgataaatatcctcatatgttatcagtaaagaactgttttattcggggttcagta
gtcagatatgtccagttaccagctgatgaatgtgatacacagttactacaagatgcagca
cggaaagaagctgcacagaacaaatcaagataa
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