Lottia gigantea (owl limpet): LOTGIDRAFT_224051
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Entry
LOTGIDRAFT_224051 CDS
T03273
Name
(RefSeq) hypothetical protein
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
lgi
Lottia gigantea (owl limpet)
Brite
KEGG Orthology (KO) [BR:
lgi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lgi03009
]
LOTGIDRAFT_224051
Enzymes [BR:
lgi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LOTGIDRAFT_224051
Ribosome biogenesis [BR:
lgi03009
]
Eukaryotic type
Pre-60S particles
Helicases
LOTGIDRAFT_224051
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DUF4217
ResIII
Helicase_C_2
DUF3043
Motif
Other DBs
NCBI-GeneID:
20247181
NCBI-ProteinID:
XP_009045128
JGI:
224051
UniProt:
V4BEH0
LinkDB
All DBs
Position
Unknown
AA seq
587 aa
AA seq
DB search
MDESWDNLNVQLDSNISKSIKQLGFKHMTPVQAATIPRFLQNKDVAVEAVTGSGKTLAFI
IPLLQMLLKRDTPLKKNEIGGLILTPTRELAIQIDEVLNQFLSHVTQFTSCLFIGGLDVT
QMIEKFKTQGCNIIIATPGRMEDLFQRKHDGFNLPASVKALEVLVLDEADRLLEMGFETS
INMILSHLPKQRRTGLFSATQTDEVENLIRAGLRNPLRITVKEKKNTVNQLVPKTPALLQ
NYYMIVEADEKMNQLISFLRKHKKNKILVFFSTCASVDYFKKIIEQFVQNTTVFHIHGKL
KQKRVKVIEKLRNADNGILVCTDLMARGIDIPDIDWVVQFDPPSSSRAFVHRCGRTARIG
NKGNALVMLLPAEETYISFLKINQRTPMVEMLVDEKAANIVPKVKKFTKRDRALYESGMK
AFVSFIQFYGKHECSMIFKTKELNIGKLATGYALLRLPKMPELKGKVIDNFTEEDIEPDS
IMYKDKIREKKRQEEIRKIQSGEIVKKTRNFRTKAWSDQKVRKEKRKENRERRARKKKRK
QEEMSQGDLDELDDDMKLFKKFRKGKVSKEDLNKEIDATLEKGEGVK
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atggatgaaagttgggataaccttaatgttcaactggattctaatatcagtaaatctata
aaacaactgggttttaaacatatgacaccagttcaggcagcaactattccaagatttcta
cagaataaagatgtcgctgttgaagctgtaacaggaagtggaaaaacattagcctttatt
ataccactgttacagatgttattaaagagagatacccctctcaagaaaaatgagattggt
ggtctaatactaactcctacccgagaattagccatacaaatagatgaagttttaaaccag
tttctatcacatgtcactcaatttacatcctgtctttttattggtggattagatgtcact
caaatgatagaaaagtttaaaacacaggggtgtaatattataatagcaacaccaggtaga
atggaagatttatttcagagaaaacatgatggtttcaatttacctgcatcagtcaaagct
ctagaagtattggtattagatgaagcagacagattattagaaatgggatttgaaacaagt
ataaatatgattttaagtcacctaccaaaacaaagaagaacaggattattttcagcaaca
cagactgatgaagtagaaaatcttattagagctggtttacggaatccattacgtattaca
gtgaaagagaagaaaaatacagtaaatcaactagtccctaaaacaccagccttattacaa
aattattacatgattgttgaagcagatgagaaaatgaatcagttaatatcatttctgcgt
aaacataaaaaaaataaaattctagttttcttcagtacttgtgcttctgttgattatttt
aaaaagataatagaacaatttgtacagaatacaacagtttttcatattcatggtaaatta
aaacagaaaagagtaaaagttattgagaaattacgcaatgcagacaatggtatattggta
tgtacagatttaatggctagaggtatagatataccagatatagattgggtagttcaattt
gatccacctagttcttctagagcctttgtacatcgttgtggaagaactgctagaattggt
aataaaggaaatgctttagttatgttattacctgctgaagaaacttatatttcttttcta
aaaataaaccagaggacacctatggtcgaaatgctggttgatgaaaaggcagctaatatt
gtaccaaaagttaaaaaatttacaaaaagagacagagcgttatatgaaagtggtatgaaa
gcttttgtatcatttatacagttttatggtaaacatgaatgtagtatgattttcaaaact
aaagaattaaatataggtaaattagctacaggatatgcattattaagattacctaaaatg
cctgagttaaaagggaaagtgattgataactttacagaagaagatatagagcctgatagt
ataatgtataaagataaaatcagagaaaaaaagagacaggaagaaatcaggaagatacaa
tctggagaaattgtgaagaaaaccagaaatttcaggactaaagcctggtcagatcaaaaa
gtcagaaaagaaaaaaggaaagagaatcgagaaaggagagctagaaagaaaaaaagaaaa
caagaagaaatgagtcaaggtgatttagatgaattagatgatgatatgaaattatttaag
aagtttagaaaaggcaaagtttccaaagaagatttaaataaagaaattgatgccacactt
gaaaaaggagaaggtgttaagtga
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