Lottia gigantea (owl limpet): LOTGIDRAFT_225283
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Entry
LOTGIDRAFT_225283 CDS
T03273
Name
(RefSeq) hypothetical protein
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
lgi
Lottia gigantea (owl limpet)
Pathway
lgi03013
Nucleocytoplasmic transport
lgi03015
mRNA surveillance pathway
lgi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lgi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
LOTGIDRAFT_225283
09122 Translation
03013 Nucleocytoplasmic transport
LOTGIDRAFT_225283
03015 mRNA surveillance pathway
LOTGIDRAFT_225283
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lgi03019
]
LOTGIDRAFT_225283
03041 Spliceosome [BR:
lgi03041
]
LOTGIDRAFT_225283
03009 Ribosome biogenesis [BR:
lgi03009
]
LOTGIDRAFT_225283
03012 Translation factors [BR:
lgi03012
]
LOTGIDRAFT_225283
Enzymes [BR:
lgi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LOTGIDRAFT_225283
Messenger RNA biogenesis [BR:
lgi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
LOTGIDRAFT_225283
mRNA cycle factors
Stress granule specific factors
LOTGIDRAFT_225283
Spliceosome [BR:
lgi03041
]
Complex C
Other components
EJC/TREX
LOTGIDRAFT_225283
Ribosome biogenesis [BR:
lgi03009
]
Eukaryotic type
90S particles
Helicases
LOTGIDRAFT_225283
Translation factors [BR:
lgi03012
]
Eukaryotic type
Initiation factors
eIF-4
LOTGIDRAFT_225283
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
Cas3-like_C_2
AAA_22
TniB
Utp25_C
UvrD-helicase
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
20247272
NCBI-ProteinID:
XP_009047705
JGI:
225283
UniProt:
V4B229
LinkDB
All DBs
Position
Unknown
AA seq
399 aa
AA seq
DB search
MATRRVLEDDLKNVEFETSEEVDVTPTFDNMGLREELLRGIYAYGFEKPSAIQQRAVKPI
TKGRDVIAQAQSGTGKTATFSISILQTVETQLRETQALCLAPTRELAVQIQKVILALGDY
MNIQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIKRRNLRTRSIKMLVLDEADEM
LNKGFKEQIYDVYRYLPPATQVLLISATLPHEILEMTSKFMTDPIRILVKRDELTLEGIK
QFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDML
QKEREAIMKEFRSGESRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFG
RKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgcggcgtgtgttagaagacgatctgaaaaatgttgaattcgaaacaagcgag
gaagttgatgttactccaacgtttgacaacatgggtcttagggaggaactgctaaggggc
atatatgcatatgggtttgaaaaaccatcagctattcaacagagagcagtgaagccaata
acgaaaggcagagatgtgattgctcaagctcaatctggtactggtaaaacagccacattt
tccataagcatattacaaactgttgaaacacaattaagagaaacacaagctctttgttta
gcacctaccagagagttagctgtacagattcaaaaggttatattggcgttgggtgattat
atgaatatacaatgtcatgcctgtattggtggaacaaatgttggagaagacatcagaaaa
ttggattatggtcaacatgttgttgctggtacacctggcagagtttttgatatgattaaa
agaaggaatttacgaactagatcaatcaagatgttggtattagacgaggcagatgaaatg
ttaaataaaggttttaaagaacaaatttatgatgtatatagatatttgccaccagctaca
caagttctacttatatctgctaccttaccacatgaaatccttgaaatgaccagtaaattt
atgactgatcccatccgaatcttagttaaacgtgatgagttgacattagagggtattaaa
cagttttttgtagctgtagaaagagaggagtggaagtttgatacattatgtgatttgtat
gatacattaactattactcaagctgttatattctgtaacacaaagagaaaggttgactgg
ttaacagagaaaatgagagaagctaattttactgtatcatctatgcatggtgatatgctt
cagaaagaaagagaagccattatgaaagaatttagatcaggagaaagtcgtgtgttgata
acaacagatgtatgggctagaggtattgatgttcaacaagtatcattagtcattaattat
gatctaccaaataacagagaattgtacattcacagaattggtagatcaggtagatttggt
cgtaaaggtgtggctattaattttgtgaagaatgatgatattcgtattttacgtgatatt
gaacagtactattctacacagattgatgaaatgccaatgaacgttgctgatttgatttaa
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