Lottia gigantea (owl limpet): LOTGIDRAFT_225638
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Entry
LOTGIDRAFT_225638 CDS
T03273
Name
(RefSeq) hypothetical protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
lgi
Lottia gigantea (owl limpet)
Pathway
lgi03013
Nucleocytoplasmic transport
lgi03015
mRNA surveillance pathway
lgi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lgi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
LOTGIDRAFT_225638
09122 Translation
03013 Nucleocytoplasmic transport
LOTGIDRAFT_225638
03015 mRNA surveillance pathway
LOTGIDRAFT_225638
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lgi03019
]
LOTGIDRAFT_225638
03041 Spliceosome [BR:
lgi03041
]
LOTGIDRAFT_225638
Enzymes [BR:
lgi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LOTGIDRAFT_225638
Messenger RNA biogenesis [BR:
lgi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
LOTGIDRAFT_225638
Spliceosome [BR:
lgi03041
]
Complex C
Other components
EJC/TREX
LOTGIDRAFT_225638
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
LOTGIDRAFT_225638
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Utp25_C
P-loop_SecA
AAA_19
Motif
Other DBs
NCBI-GeneID:
20247297
NCBI-ProteinID:
XP_009048437
JGI:
225638
UniProt:
V4B0W2
LinkDB
All DBs
Position
Unknown
AA seq
426 aa
AA seq
DB search
MADDAAENEILDYEDEAETTTEAAGGDVVAKKDVKGTYVSIHSSGFRDFLLKPELLRAIV
DCGFEHPSEVQHECIPQAILSMDVLCQAKSGMGKTAVFVLATLQQLEPVDGQVSVLVLAH
TRELAFQISKEYERFSKYMNNVKIAVFFGGMNVKKDEEVLKKNCPHIVVGTPGRLQALIR
SKSLSLKHVKHFILDECDKMLAELDMRRDVQEIFRMTPHEKQVMMFSATLSKDVRPICKR
FMQDPMEVYVDDDSKLTLHGLQQHYVKLKDNEKNRKLFELLDVLEFNQVIIFVKSVQRCM
ALAQLLQEQNFPAIAIHRAMTQEERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFN
YDMPEDSDTYLHRVARAGRFGTKGLAITLISDENDAKILNDVQERFEVNITELPDEIDIS
SYIEGR
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atggcagatgatgcagcagagaatgaaatcctcgactatgaagatgaagcagaaacaaca
actgaagccgctggtggggatgtggtagcaaagaaagatgtaaagggaacctacgtctct
attcacagttctggtttccgagatttcttgttgaaacctgaattgttgagagctattgta
gattgtggttttgaacatccttctgaagttcagcatgagtgtattccacaggccatctta
tctatggatgttttatgtcaggccaagtctggtatgggtaaaacagctgtatttgtcttg
gcaactctccaacaattagagccagtcgatggacaggtatctgttttggtattggctcat
acaagagaattggcttttcaaatcagtaaggaatatgaaagattcagtaaatatatgaac
aatgtaaagattgctgtattttttggtggaatgaacgtaaagaaagatgaagaggttctg
aagaagaactgtccacatattgtagttggtactcctggacgtctacaagctctgattaga
agtaaatctctcagtttaaaacatgtcaaacattttatattggatgaatgcgacaaaatg
ttggctgaactcgacatgagaagagatgttcaagaaatcttcagaatgaccccccacgag
aaacaagttatgatgtttagtgctaccctcagtaaagatgtccgaccaatctgtaaaaga
tttatgcaagatccgatggaagtttacgttgatgatgattctaaactaactctacacggt
ctgcagcaacattacgttaaattgaaggataacgagaagaatcgtaaattatttgaactt
ttggatgttttggaatttaatcaggtgataatattcgtcaagagtgtacaaagatgtatg
gccctagctcagttacttcaagaacagaatttccctgctatagctatacatagagccatg
acacaggaagaaagattgtcgaggtaccagcagtttaaagattttcagaaacgtatttta
gtggctactaatttatttggtcgtggtatggatattgaaagagttaatattgtatttaat
tatgatatgcctgaagactcagacacttatcttcacagagtagctcgtgctggaagattt
ggtacgaagggtttagctataactctgatctctgatgaaaatgatgccaagattttaaac
gatgtacaagagagatttgaagtcaacataactgaattacctgatgaaatcgacatctct
tcttacattgaaggaagataa
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