KEGG   Lottia gigantea (owl limpet): LOTGIDRAFT_228440
Entry
LOTGIDRAFT_228440 CDS       T03273                                 
Name
(RefSeq) hypothetical protein
  KO
K10755  replication factor C subunit 2/4
Organism
lgi  Lottia gigantea (owl limpet)
Pathway
lgi03030  DNA replication
lgi03410  Base excision repair
lgi03420  Nucleotide excision repair
lgi03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:lgi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    LOTGIDRAFT_228440
   03410 Base excision repair
    LOTGIDRAFT_228440
   03420 Nucleotide excision repair
    LOTGIDRAFT_228440
   03430 Mismatch repair
    LOTGIDRAFT_228440
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:lgi03032]
    LOTGIDRAFT_228440
   03036 Chromosome and associated proteins [BR:lgi03036]
    LOTGIDRAFT_228440
   03400 DNA repair and recombination proteins [BR:lgi03400]
    LOTGIDRAFT_228440
DNA replication proteins [BR:lgi03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    LOTGIDRAFT_228440
  DNA Replication Termination Factors
   ELG1-RFC complex
    LOTGIDRAFT_228440
Chromosome and associated proteins [BR:lgi03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    LOTGIDRAFT_228440
DNA repair and recombination proteins [BR:lgi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     LOTGIDRAFT_228440
  Check point factors
   HRAD17(Rad24)-RFC complex
    LOTGIDRAFT_228440
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid AAA_14 AAA_22 AAA_16 Viral_helicase1 Rad17 AAA_24 AAA_11 nSTAND3 AAA_assoc_2 Mg_chelatase RuvB_N AAA_19 AAA_18 ABC_tran AAA_28 AAA_25 DNAX_ATPase_lid AAA_5 MeaB AAA_30 NTPase_1 SLFN-g3_helicase FtsK_SpoIIIE MipZ IstB_IS21
Other DBs
NCBI-GeneID: 20247666
NCBI-ProteinID: XP_009051764
JGI: 228440
UniProt: V4C889
LinkDB
Position
Unknown
AA seq 348 aa
MADEEKMEIDEPVSSKVKDRPKTGGYEVPWVEKYRPSKMCDIVGNEETISRLTVFSREGN
VPNVIIAGPPGTGKTTSILCLARTMLGPSYRDAVLELNASNDRGIDVVRNKIKMFAQQKV
TLPKGRHKIIILDEADSMTEGAQQALRRTMEIYSKTTRFALACNSSEKIIEPIQSRCAVL
RYSKLSDSQLLARLLEVCTSESVSYTDDGLEAIVFTAQGDMRQALNNLQSTFQGFGHVNS
ENVFKVCDEPHPTLIKKMLQHCVEVNIEESYKVMAHLWKLGYSPHDIINIVFRVCKNHDM
PEFLKLEFIKEIGYTHMRIAEGVDSLLQMAGLLSRLCKKSAAPDILVQ
NT seq 1047 nt   +upstreamnt  +downstreamnt
atggcggacgaagagaagatggaaattgatgaacctgtttcatctaaagttaaagacaga
ccaaagactgggggatatgaagtaccatgggtagagaagtacagaccatctaaaatgtgt
gatatagttggtaatgaagagactataagtagattaactgtgtttagtagagagggcaat
gttcctaatgttatcatagcaggtccccctggtacaggtaaaaccaccagtattttatgt
ctagctagaacaatgttaggtccatcatacagagatgctgtcttggaattgaacgcttcc
aatgatagaggaatagatgttgttagaaataaaattaaaatgtttgctcagcagaaagtc
actctacctaaaggacgacataaaattattatattggatgaagctgacagcatgacagaa
ggtgctcaacaagctttgagaagaacaatggaaatatactctaaaactaccagatttgct
ctagcttgtaactcttcagagaaaattattgaaccaattcaatctcgatgtgctgtgttg
agatattctaagctaagtgatagtcagttattagctaggctattagaggtgtgtaccagt
gaatcagttagttatacagatgatgggctggaagctatagtttttacagcacagggtgat
atgagacaggctctcaacaatcttcagtcaacatttcaaggttttggtcatgttaacagt
gaaaatgtattcaaagtatgtgatgaacctcatcccacactaataaagaagatgttacaa
cattgtgttgaagtgaatatagaagaatcatataaagttatggcacatctgtggaaacta
ggctattctccacatgatatcattaatattgtattccgtgtttgtaaaaatcatgatatg
ccagaatttcttaaattagaatttattaaggaaattggatatacccacatgaggatagca
gaaggtgtggattctttattacaaatggcaggactattatctagattgtgtaaaaaatct
gctgcaccagatatacttgttcagtga

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