Lottia gigantea (owl limpet): LOTGIDRAFT_228440
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Entry
LOTGIDRAFT_228440 CDS
T03273
Name
(RefSeq) hypothetical protein
KO
K10755
replication factor C subunit 2/4
Organism
lgi
Lottia gigantea (owl limpet)
Pathway
lgi03030
DNA replication
lgi03410
Base excision repair
lgi03420
Nucleotide excision repair
lgi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lgi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LOTGIDRAFT_228440
03410 Base excision repair
LOTGIDRAFT_228440
03420 Nucleotide excision repair
LOTGIDRAFT_228440
03430 Mismatch repair
LOTGIDRAFT_228440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lgi03032
]
LOTGIDRAFT_228440
03036 Chromosome and associated proteins [BR:
lgi03036
]
LOTGIDRAFT_228440
03400 DNA repair and recombination proteins [BR:
lgi03400
]
LOTGIDRAFT_228440
DNA replication proteins [BR:
lgi03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
LOTGIDRAFT_228440
DNA Replication Termination Factors
ELG1-RFC complex
LOTGIDRAFT_228440
Chromosome and associated proteins [BR:
lgi03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
LOTGIDRAFT_228440
DNA repair and recombination proteins [BR:
lgi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
LOTGIDRAFT_228440
Check point factors
HRAD17(Rad24)-RFC complex
LOTGIDRAFT_228440
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
RCF1-5-like_lid
AAA_14
AAA_22
AAA_16
Viral_helicase1
Rad17
AAA_24
AAA_11
nSTAND3
AAA_assoc_2
Mg_chelatase
RuvB_N
AAA_19
AAA_18
ABC_tran
AAA_28
AAA_25
DNAX_ATPase_lid
AAA_5
MeaB
AAA_30
NTPase_1
SLFN-g3_helicase
FtsK_SpoIIIE
MipZ
IstB_IS21
Motif
Other DBs
NCBI-GeneID:
20247666
NCBI-ProteinID:
XP_009051764
JGI:
228440
UniProt:
V4C889
LinkDB
All DBs
Position
Unknown
AA seq
348 aa
AA seq
DB search
MADEEKMEIDEPVSSKVKDRPKTGGYEVPWVEKYRPSKMCDIVGNEETISRLTVFSREGN
VPNVIIAGPPGTGKTTSILCLARTMLGPSYRDAVLELNASNDRGIDVVRNKIKMFAQQKV
TLPKGRHKIIILDEADSMTEGAQQALRRTMEIYSKTTRFALACNSSEKIIEPIQSRCAVL
RYSKLSDSQLLARLLEVCTSESVSYTDDGLEAIVFTAQGDMRQALNNLQSTFQGFGHVNS
ENVFKVCDEPHPTLIKKMLQHCVEVNIEESYKVMAHLWKLGYSPHDIINIVFRVCKNHDM
PEFLKLEFIKEIGYTHMRIAEGVDSLLQMAGLLSRLCKKSAAPDILVQ
NT seq
1047 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgaagagaagatggaaattgatgaacctgtttcatctaaagttaaagacaga
ccaaagactgggggatatgaagtaccatgggtagagaagtacagaccatctaaaatgtgt
gatatagttggtaatgaagagactataagtagattaactgtgtttagtagagagggcaat
gttcctaatgttatcatagcaggtccccctggtacaggtaaaaccaccagtattttatgt
ctagctagaacaatgttaggtccatcatacagagatgctgtcttggaattgaacgcttcc
aatgatagaggaatagatgttgttagaaataaaattaaaatgtttgctcagcagaaagtc
actctacctaaaggacgacataaaattattatattggatgaagctgacagcatgacagaa
ggtgctcaacaagctttgagaagaacaatggaaatatactctaaaactaccagatttgct
ctagcttgtaactcttcagagaaaattattgaaccaattcaatctcgatgtgctgtgttg
agatattctaagctaagtgatagtcagttattagctaggctattagaggtgtgtaccagt
gaatcagttagttatacagatgatgggctggaagctatagtttttacagcacagggtgat
atgagacaggctctcaacaatcttcagtcaacatttcaaggttttggtcatgttaacagt
gaaaatgtattcaaagtatgtgatgaacctcatcccacactaataaagaagatgttacaa
cattgtgttgaagtgaatatagaagaatcatataaagttatggcacatctgtggaaacta
ggctattctccacatgatatcattaatattgtattccgtgtttgtaaaaatcatgatatg
ccagaatttcttaaattagaatttattaaggaaattggatatacccacatgaggatagca
gaaggtgtggattctttattacaaatggcaggactattatctagattgtgtaaaaaatct
gctgcaccagatatacttgttcagtga
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