Lottia gigantea (owl limpet): LOTGIDRAFT_228669
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Entry
LOTGIDRAFT_228669 CDS
T03273
Name
(RefSeq) hypothetical protein
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
lgi
Lottia gigantea (owl limpet)
Pathway
lgi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lgi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
LOTGIDRAFT_228669
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lgi03019
]
LOTGIDRAFT_228669
Messenger RNA biogenesis [BR:
lgi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
LOTGIDRAFT_228669
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
20247740
NCBI-ProteinID:
XP_009055600
JGI:
228669
UniProt:
V4AFS8
LinkDB
All DBs
Position
Unknown
AA seq
478 aa
AA seq
DB search
MAAAVVDEDEAWLYGDDNSGKENAKIKSTTNGKRKKDDMEEGQLSGEEEGQEKKDTADSD
DDDDDDDDDVQVTIGDIRQWSATDGGNKLFKGSGTYQKPAGVVVSKTGGATKGVDIEQQG
TINGVPTYEFDITSIEDKPWRKPGADITDYFNYGFDEESWTVYCDKQKKLRAENGASYSS
LSGSSIKKDMSNTSSHTSQVATLIGRKAAPPPNRRYYGTIDVIGSTATNTRRPTETGSAI
STITVTGGATEYNPAVPPPGMAPAIPDYSVPPPGLGVPPTLLPPGVTPNVSLPPPNYPPP
GFYPPPGTIPTSEAYEERNYTYDPATGTYNYSGAPPAWDSRGSYGGGYGEYSSSRRDRSP
VSDDEYSMSSHRDRERDRSSSYYRERDRDRDRDRDRDSRSDRDRDRRDRDRDRDRSRDRD
RDSSRERRHKDDSKHKKRRFKEEKDSDDHHSSSKHKKSSRSKKRDKDGEESTDDKQTE
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atggcagctgccgtagttgatgaagacgaagcttggctttatggagatgataattcaggc
aaggaaaatgcaaaaatcaaatcaactacaaatggtaaacgaaaaaaagatgacatggaa
gagggtcagctgagtggtgaagaagaaggtcaagaaaagaaagatacagctgactcagat
gacgatgatgatgatgatgacgatgatgttcaggtcactataggtgatattagacagtgg
agtgcgactgatggcggtaacaaattatttaaaggaagtggaacatatcaaaaaccagca
ggagttgtggtgtcaaagacaggaggggcaactaaaggtgtagatattgaacaacagggt
actatcaatggtgtacctacttatgaatttgatatcactagtattgaagacaaaccttgg
agaaaacctggtgctgatataacagactattttaactatggttttgatgaagaatcatgg
acagtatattgtgataaacagaagaagttacgtgctgaaaatggtgcttcatatagtagt
ttgtctggttcttcaattaagaaggatatgagtaatacctcatctcatacatcccaagtt
gctacattgatagggcgtaaagcagccccaccccctaaccgtagatattatggtactatt
gatgttattggttcaacagctaccaatactcgcagacctactgagactggtagtgccatt
agtactataacagtcactggaggtgcaacagaatataatcctgcagtaccaccacctggt
atggcacctgctataccagattatagtgtaccaccacctggattaggtgttcctcctact
ttattaccacctggggttacaccaaatgtgagtcttcctccaccaaattatccaccccca
ggtttctatcctccgcctggtacaataccaaccagtgaagcatatgaagaaagaaattat
acctatgatccagctactggtacttataattatagtggtgctcctccagcttgggatagt
cgaggttcgtatggtggaggttatggtgaatatagtagtagtagaagagatagatcacct
gtatcagatgatgaatattctatgtctagtcatagagacagggaaagggatagaagtagt
tcatactatagagaaagagatcgtgatagggaccgagatagagatcgtgatagtagaagt
gatagagacagagatagacgagatcgtgatagagacagagatagatcacgagacagggac
agagacagttctagagagagaagacataaagatgattctaaacataaaaaaagaagattt
aaggaagaaaaagacagtgatgaccaccattcttcttctaaacataagaaaagtagtcgg
agtaaaaaaagggataaagatggtgaagaatcaactgatgataaacaaactgaataa
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