KEGG   Lottia gigantea (owl limpet): LOTGIDRAFT_231033
Entry
LOTGIDRAFT_231033 CDS       T03273                                 
Name
(RefSeq) hypothetical protein
  KO
K14962  COMPASS component SWD2
Organism
lgi  Lottia gigantea (owl limpet)
Pathway
lgi03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:lgi00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    LOTGIDRAFT_231033
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lgi03019]
    LOTGIDRAFT_231033
   03036 Chromosome and associated proteins [BR:lgi03036]
    LOTGIDRAFT_231033
Messenger RNA biogenesis [BR:lgi03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     LOTGIDRAFT_231033
Chromosome and associated proteins [BR:lgi03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     LOTGIDRAFT_231033
    COMPASS/SET1 complex (yeast)
     LOTGIDRAFT_231033
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_WDR90_POC16_2nd Beta-prop_CAF1B_HIR1 WDR55 Beta-prop_TEP1_2nd ANAPC4_WD40 EIF3I Beta-prop_IFT122_1st Beta-prop_WDR75_1st WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_SPT8 Beta-prop_TEP1_C WDR90_beta-prop_4th WD40_MABP1-WDR62_1st WD40_RFWD3 Beta-prop_IFT140_1st Beta-prop_NUP159_NUP214 WD_LRWD1 Beta-prop_HPS5 MIOS_WD40
Other DBs
NCBI-GeneID: 20248442
NCBI-ProteinID: XP_009049779
JGI: 231033
UniProt: V4A5S6
LinkDB
Position
Unknown
AA seq 313 aa
MRLTENVVRNLRVAKIFRENTERINSIDFSSNGETLISSSDDDSIVIYDCLNGTPKRTLN
SKKYGVDLIRYTHAVNAALHSSTKVDDTIRYLSLHDNKYIRYFPGHTKKVVTLCMSPIDD
SFLSGSLDKTIRLWDLRSQNCQGLMHLSGRPVASFDPEGLIFAAGINSETVKLYDLRSFD
RGPFAAFKLPQDKECDWTGVKFSPDGKLILISTNGGVLRLLDAFQGTPLQNFTGFTNNRG
LPIEASFSPDSQFVFCGSTDGKVHSWSTETGTKLAILQADHPGPIQNLLFNPKYMMMASA
CSNMAFWLPLVDE
NT seq 942 nt   +upstreamnt  +downstreamnt
atgagattaactgaaaatgtggtgcgaaatcttcgcgttgcgaagatatttcgagaaaac
actgaacgcattaatagcattgatttctcctcaaacggagagacattgatttcgagtagc
gatgatgattcaattgttatttatgattgtttgaacggaacaccgaaaagaacattaaac
agtaaaaaatatggagtagatttaattagatacacacatgcagttaatgcagcattgcat
tcttctactaaagtagatgataccataagatatttgtcgttacatgataataaatatatt
cgttatttccctggtcatacaaaaaaggttgttacattgtgcatgtcacctatagatgat
agttttctatctggttcattagataaaacaatcagattatgggatctcagatcgcagaat
tgtcagggcttgatgcatttatctggaagaccagttgcgtcatttgatcctgaaggactt
atttttgctgctggaattaattctgaaacagttaaactttatgatttaagatctttcgac
aggggaccatttgcagcatttaaattgccacaagataaagaatgtgactggactggtgtt
aaatttagtcctgatggtaaattaatattgatatcaactaatggtggtgtattacggcta
cttgatgcttttcaaggaacacccttacaaaattttactggttttacaaacaatagaggg
ttaccaatagaagcatctttcagtccagattcacagtttgtattttgtggttcaactgat
ggtaaagtacacagttggagcacggaaactggtactaaattagcaatattacaagcagat
catccgggtccaatacaaaatttactttttaatcctaaatatatgatgatggcttcagct
tgttcaaatatggcattttggttaccattagttgatgaatga

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