KEGG   Lottia gigantea (owl limpet): LOTGIDRAFT_236170
Entry
LOTGIDRAFT_236170 CDS       T03273                                 
Name
(RefSeq) hypothetical protein
  KO
K13174  THO complex subunit 5
Organism
lgi  Lottia gigantea (owl limpet)
Pathway
lgi03013  Nucleocytoplasmic transport
lgi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lgi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    LOTGIDRAFT_236170
  09122 Translation
   03013 Nucleocytoplasmic transport
    LOTGIDRAFT_236170
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lgi03019]
    LOTGIDRAFT_236170
   03041 Spliceosome [BR:lgi03041]
    LOTGIDRAFT_236170
Messenger RNA biogenesis [BR:lgi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     LOTGIDRAFT_236170
Spliceosome [BR:lgi03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    LOTGIDRAFT_236170
SSDB
Motif
Pfam: FmiP_Thoc5 TPH DUF4961
Other DBs
NCBI-GeneID: 20250068
NCBI-ProteinID: XP_009064650
JGI: 236170
UniProt: V4B7Q0
LinkDB
Position
Unknown
AA seq 850 aa
MTSVARDEKERKKKRLIKTETSTPEVKKSKETVALFYAEEAEVDKRDPETDLTLFQGACG
VVREAVNDIQKMKTHGKTNKSELEEKRADAVIQFVTLKKINRLSHFRCRKVRDSTNEAKQ
RIDKYHLQLQNLLYEAMHLQKEINKCLEFKSKDEEIDLVPVEEFYKEAPKQISKPETTKK
DEHQLTLARLDWELEQRQRLSKKLKEVSSSKDEILKEIDTKQEYLDSLQPKLNSILQATK
PVQTYLKMPYDETKEQHSTALHLPHPLYVLYMQSSAYKDACDKNLKVTIDGDIHSAKTLD
MSVQEIEEDSDSDNEEHEKKTIAEEKLYEHWKQNNPDLRKVESELQQEDVINKWSDQIVE
QEEKLLSARLEEKEFERLQEEKRQAALEEERKKEMKRLQDQKKLKQVLEDQMRELRQRES
ESERIKNEQESLELEQWNLEKLEESRRLKEEQRKKQDFGLKKIAFVTKKKETTEDRLSDK
KQRVFRKHPLTVAMEILCKEGSELLLTFSYNLQLHITALFIIIITEGSKLLLTFSYLLQL
EIITVHVKVLPSLESVHSSISGSDLLSPDSILNEIYTGDHGNNTPNPANQYELRRMGLHD
FSEYVNQVGRPYQWTQWLGGLQFLGDGNPVTVKSTVSSGYMQQTVKQLRKRLKARLALLH
QMASLERNTIPVSSNLIDMFPAKISSRLISWKRSTYEDFCSLDYTRNIIEGSLVSETDIY
FVATMERGSAKLISQVVVAADYPTVPPMFVVSISWQTDRNATTDVHIQELEEEVNVHYTE
LIKDKSKDNLLSNQLQRLLMCFDIYLETETQDLSAPIEIPKEKVFTRLARGPNRKKPYKY
IPDLGIFTHR
NT seq 2553 nt   +upstreamnt  +downstreamnt
atgacgtctgtcgcaagggatgaaaaagaaaggaagaaaaagcgactgattaaaacagaa
acctcaaccccagaggttaaaaaatctaaagaaactgttgctttgttttatgctgaagaa
gcagaagttgataaaagagacccggaaacagatttaactttgtttcaaggtgcttgtggt
gttgtgagagaagctgtcaatgatatacaaaaaatgaaaactcatggaaaaactaataaa
agtgaactagaagaaaaaagagctgatgctgtaatacagtttgttacattaaagaagata
aatagattgtctcattttagatgccgtaaagttagagattccactaatgaggccaaacag
agaatagacaagtaccatcttcagttacagaatttgttatatgaagctatgcatttacag
aaagaaattaataaatgtttggaattcaaatctaaagatgaagaaatagatttagtacct
gtagaagagttttataaggaagctccaaaacaaatatcaaaaccagaaacaactaagaaa
gatgaacatcagttgacactcgctagattagattgggagttagaacaaagacaaagatta
tcaaaaaaactgaaagaagtatctagtagtaaagatgaaatattaaaagagattgatact
aaacaagaatatttagacagtctacaacctaagttaaactctattttacaagcaaccaag
ccagtgcagacatacctaaaaatgccatatgatgaaactaaagaacaacattctacagca
ttacatttaccacacccattgtatgttttatacatgcagtcttcagcttataaagatgct
tgtgataagaatttgaaagtaacaatagatggagatatacattcagctaaaactctagat
atgtcagtacaagaaatagaagaagatagtgacagtgataatgaagaacatgaaaagaaa
acaatagctgaagaaaaattatatgaacattggaaacaaaataatccagatttaagaaaa
gtggaatctgaactacaacaagaagatgttatcaataaatggtcagatcagatagttgaa
caagaggagaaattattatcagcacgactagaggaaaaggaatttgaaagactacaagaa
gaaaaaagacaagcagctttagaagaagagagaaaaaaagaaatgaaaagactacaagat
cagaagaaattaaaacaagttttagaggatcaaatgagagagctaagacagagagaatct
gagagtgaaagaattaaaaatgaacaagaaagtttagaattagaacagtggaatttagaa
aagctggaagaaagtagaagattgaaggaagaacagaggaaaaaacaagattttggacta
aagaaaattgcttttgtaacaaagaagaaggaaacaacagaagatagattatctgataaa
aaacagagagtttttcgtaaacatcctcttacagttgccatggagatattatgtaaagaa
ggaagtgaattattactgactttctcctacaatttacaactacacataacagcacttttt
attattattattacagaaggaagtaaattattactgactttctcctaccttttacaacta
gagattataacagttcatgtgaaagtattacctagtctagaaagtgtacacagctctatt
tctggatcagatttgttatcaccagattctatattgaatgagatctatactggtgatcat
ggtaacaatacgccgaatcctgccaatcaatatgaattacgtagaatgggattacatgat
tttagtgagtatgtaaaccaagtaggcagaccatatcaatggacacaatggttaggtggt
ttacagtttctaggagatggtaatccagtcactgttaaaagtactgtcagctctggctac
atgcaacaaactgtcaaacaactacgaaagagactcaaggcacgactggcgttacttcat
caaatggcttcactcgagagaaatactataccagttagtagtaatctgattgatatgttc
ccagctaaaatatccagtcgcttaatatcatggaaacggtcaacatatgaagatttctgt
agtctggattataccaggaatataattgaaggaagtttagtatcagaaactgatatctat
tttgttgctactatggaaagagggtctgccaagttaataagtcaggttgttgtagcagct
gattatcctacagtaccaccaatgtttgttgttagtatttcatggcaaacagacagaaat
gctaccactgatgtccacatacaggaattggaagaagaagtaaatgttcattatacagaa
ttaattaaagataaaagtaaagataatttattatccaatcaattacaaagattattgatg
tgttttgatatctatcttgaaactgaaactcaagatttatcagctcctattgaaatacct
aaagagaaagtgttcaccagattagccaggggaccaaataggaagaaaccatacaaatat
attccagatttaggtatctttactcatcgataa

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