Lottia gigantea (owl limpet): LOTGIDRAFT_236450
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Entry
LOTGIDRAFT_236450 CDS
T03273
Name
(RefSeq) hypothetical protein
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
lgi
Lottia gigantea (owl limpet)
Pathway
lgi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lgi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
LOTGIDRAFT_236450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lgi03019
]
LOTGIDRAFT_236450
03041 Spliceosome [BR:
lgi03041
]
LOTGIDRAFT_236450
Messenger RNA biogenesis [BR:
lgi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
LOTGIDRAFT_236450
Spliceosome [BR:
lgi03041
]
Complex B
Other components
Prp19-related factors
LOTGIDRAFT_236450
Complex C
LOTGIDRAFT_236450
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_2
TPR_12
TPR_8
Mad3_BUB1_I
NRDE-2
ARM_TT21_C
TPR_10
ARM_TT21
ATG1-like_MIT2
PPR
LTN1_E3_ligase_6th
Motif
Other DBs
NCBI-GeneID:
20250155
NCBI-ProteinID:
XP_009065584
JGI:
236450
UniProt:
V3ZMY2
LinkDB
All DBs
Position
Unknown
AA seq
857 aa
AA seq
DB search
MQLRLVPNITQSQHLFSRKQIDTVLIDVEEDDLPFEEDILRNPYSVKCWLRYIEQKKSAT
SSVINVLYERALKELPGSYKLWYNYLKLRRNQLKGKCVVDPAYEDVNSAYERSLVFMHKM
PRIWIDYCQLLMDQGKITRSRRTFDRALRSLPVTQHNRIWPLYLKFVRLYDLKETAVRVY
RRHLMLQKETAEEYIEYLISIGWLDEAAIKLAEIINDETFVSKSGKSKHQLWNELCELIA
KNPDKVTSLKIEPIIRQGLKRYSDQIGVLWNSLADYYIRGGHFERARDIYEEAIQTVITV
RDFTQVFDAFSQFEKSMISAKMESMEESGATEEDDVELELRLARLEDLMDRRPLLLNSVL
LRQNPHNVHEWHKRVKLYEGKPREIINTYTEAVQTVDPQLASGKPHTLWVEFAKFYENAD
QIDDSRVIFDKATKVPYKHVDDLASVWCEWAEMEIRQDNNEEALKLMQKATAPPPRKTAY
HDETETVQNRVHKSLKVWSLYADLEESFGTFKSCKAVYDRIIDLRIATPQIIINYGMFLE
ESNYFEEAFKAYEKGIALFKWPNVYDIWNNYLAKFIQRYGGSKLERARDLFEQCLEDCPL
KYAKSIYLLFAKLEEDHGLARHAMAVYDRATNGVLPEEQNEMFNIYIKKAAEIYGVTHTR
SIYEKAIEVLNHEQSREMCLRFADLERKLGEIDRARAVYAHCSQTCDPRTTEKFWATWKE
FEIKHGNEDTVREMLRIKRSVQATYNTQVNFMSAQMLVATGNKTETGEVNEMQKLEEKAR
QLAEESLRDQPQADKKLLFVRSSTTTEELGELTKTNNPEEIDIDEFESDDEAEIEGRTLR
LSPLLAHLHNVKILRIP
NT seq
2574 nt
NT seq
+upstream
nt +downstream
nt
atgcagttgaggctagttccaaatattacacaatctcaacacttattttctaggaaacaa
attgacacagtcttaattgatgtggaagaagatgatttaccatttgaagaagatatatta
cgtaatccctactctgttaaatgttggttgagatatatagaacagaagaaatctgccacc
agttctgttataaatgttctatatgagagagctctaaaagaactaccaggaagctataaa
ttatggtacaactatttaaaactacgtcgaaatcagttgaaaggaaagtgtgtagttgat
ccagcctatgaagatgttaatagtgcgtatgaacgatccttggtatttatgcataagatg
ccgagaatatggatagattattgtcagttattaatggatcaaggaaagataactcgatct
agaagaacctttgatcgtgctctacgttcgttaccagttacacaacacaatagaatctgg
ccactgtatctcaagtttgttagattatatgatttaaaggaaacagcagtcagagtttac
agaagacatttaatgttacagaaagagacagcagaagaatatatagaatatttaatatct
ataggatggttagatgaagccgctatcaaattagctgaaatcattaatgatgaaactttt
gtgtcaaaaagtggtaaatcaaaacatcagttatggaatgaactctgtgagttgatagct
aaaaatcctgataaagtgacatccttgaagattgaacctattataagacagggtttaaaa
cgctattcagaccagattggtgtgttgtggaattctctagctgattattacattcgggga
ggccattttgaaagggctagagatatatatgaagaggctatacaaacagttataacagta
cgagattttactcaagtttttgatgctttctctcagtttgagaaatctatgatatcagct
aaaatggaatcaatggaagagagtggagcaactgaagaagatgatgttgaattagaattg
aggttggctcggttagaagatctaatggatagaagaccattattactcaatagtgtatta
ttacgacagaatccacacaatgtacatgaatggcataaacgtgtaaaattatacgaaggt
aaaccaagggagataataaatacctatacagaagctgttcagactgtagacccacaacta
gcatctggtaaaccacatacactgtgggtagaatttgccaaattttacgaaaatgctgat
cagattgatgattcgagagttatatttgataaagcaactaaagtaccatataaacatgtt
gatgatttggcgtctgtttggtgtgagtgggcagaaatggaaattagacaagacaataat
gaggaagctttaaaattgatgcagaaagctacagcaccccctcctagaaaaacagcatac
catgatgagactgaaactgtacaaaacagagttcataaatcattaaaagtgtggagttta
tatgctgatttagaagaaagttttggtacatttaagtcatgtaaagcagtatatgataga
attatagatttaagaatagctactcctcagattataatcaactatggtatgtttctagaa
gaaagcaactattttgaagaggcatttaaggcatatgagaaaggaatagcattatttaaa
tggcctaatgtatatgatatttggaacaattacctggcaaagtttatacaaagatatggt
ggtagtaagctagaacgagctagagatttatttgaacaatgtttagaagactgtccttta
aaatatgctaaatcaatctatttactgtttgctaaactagaggaggatcatggtttagct
agacatgctatggctgtatatgatagagctaccaatggggtcttgccagaagaacaaaat
gagatgtttaatatctatatcaagaaggcagctgaaatctatggagtaacacatactaga
tctatttatgagaaagctatagaagtattaaatcatgaacaatctagagaaatgtgcctg
cgttttgcagatctagaaaggaaattaggtgaaatagatagagccagagctgtttatgct
cattgttctcaaacatgtgatcctaggacaacagaaaaattttgggctacatggaaagaa
tttgaaatcaagcatggtaatgaagatacagtaagagaaatgttacgtataaaacgtagt
gtacaggccacgtataatacacaggtgaatttcatgtcggctcagatgttggtagctact
gggaataaaacagaaactggtgaagttaatgagatgcagaaattagaagaaaaggcacga
caattagctgaagaatcattaagagaccaacctcaagctgataagaaattactatttgta
agaagttccactacaacagaagaattgggagaactgactaaaactaacaatcctgaagag
attgatattgatgagtttgaaagtgatgatgaggctgagattgaaggtagaacattgcgt
ctgtctccactgttggctcatcttcacaatgtcaagatattaagaataccttga
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