KEGG   Lottia gigantea (owl limpet): LOTGIDRAFT_237682
Entry
LOTGIDRAFT_237682 CDS       T03273                                 
Name
(RefSeq) hypothetical protein
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
lgi  Lottia gigantea (owl limpet)
Pathway
lgi03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:lgi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    LOTGIDRAFT_237682
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lgi03021]
    LOTGIDRAFT_237682
   03036 Chromosome and associated proteins [BR:lgi03036]
    LOTGIDRAFT_237682
Transcription machinery [BR:lgi03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     LOTGIDRAFT_237682
   Coactivators
    SAGA/TFTC/STAGA complex
     LOTGIDRAFT_237682
Chromosome and associated proteins [BR:lgi03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     LOTGIDRAFT_237682
    STAGA complex
     LOTGIDRAFT_237682
    TFTC complex
     LOTGIDRAFT_237682
    SAGA complex
     LOTGIDRAFT_237682
    SLIK complex
     LOTGIDRAFT_237682
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 EIF3I TFIID_NTD2 Beta-prop_EML_2 WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_TEP1_C WD40_MABP1-WDR62_1st Beta-prop_DCAF4 Beta-prop_SCAP Beta-prop_IFT122_1st Beta-prop_IFT140_1st ANAPC4_WD40 NBCH_WD40 Beta-prop_RIG_2nd WD40_RFWD3 WDR90_beta-prop_4th Beta-prop_EIPR1 Beta-prop_SPT8 Beta-prop_Nup120_160 WD40_like WD_LRWD1 Beta-prop_DCAF12 Beta-prop_WDR19_1st Beta-prop_HPS5 Beta-prop_NWD2_C WDR54 Mala_s_1-like Beta-prop_WDR35_TULP_N Nbas_N HTH_12
Other DBs
NCBI-GeneID: 20250525
NCBI-ProteinID: XP_009045899
JGI: 237682
UniProt: V4B750
LinkDB
Position
Unknown
AA seq 613 aa
MCDVERQISREEFYKMRRLKREEIMTSVNHYLRRRKFDKSETQATSEEKVNRSKRLCCRE
KSLTELSVISQMNSSSLTENILSFSSISGDVTACDQQFTKLKNFILEGLEAYKIELKSLL
YPIFVHVYLEMLCNGHKMPAHKFYDRHSSLFKDDDLHKPVMRILRKLDMKTDVLSCKDIT
EFLDNRYHVNLSEDTLAYLLRYLKNEDNMIMFQIFNQFLKVVVPTCASTVELREGSKNEL
RETDSKDIKDECNNDNQTVLKQAISKIRDGPPSISSICCYTFLNTSNGLYSVDVSSNNSL
ISAGFEDSTISLWSLDPDLIHTNPFLSNPAVITLAVDHCTGSDDSNNLSQRKKDVETIKL
RGHNGAVYKTCFTPDSQYLLSASLDNSVRLWDLSSHSNVVLYRGHSSAVWSLDTSGLGYF
VSCSQDRTAKLWSYDRNYPIRSFIGHTYDVDVVKFHPNSNYVATGSGDRTIRLWSLQDGR
CVRLLQGHHSSILSLAFSPNGQYLASAGEDRRIKIWDLSSGTLFKELQGHSDTVYSLNFN
PDSTILASGGLDCCVRLWDVRKNREVKSELKPSGISDNQSSPELHGIFSTKSTSILFLRF
SKNNVLRVAGNIL
NT seq 1842 nt   +upstreamnt  +downstreamnt
atgtgcgatgttgaacgacagatttcccgagaagagttttacaaaatgagaagactgaag
cgagaggaaattatgacgtctgtaaaccattatttgaggcgtaggaagttcgacaagtca
gagacacaagctacatcagaagagaaagtaaacagaagtaaacgactatgttgtagagag
aaaagtttaacagaattgagtgttattagtcagatgaactcgagtagtttaacagagaat
attttatcatttagtagtatatcaggggacgttacagcctgtgatcaacaatttaccaag
ttaaagaattttattctggaaggattagaagcatataaaatagaactcaaatcactgctg
tacccaatctttgttcatgtatatttagaaatgttgtgtaatggccacaagatgccagct
cacaagttttatgatcgtcattcctcgttatttaaagatgacgaccttcataaaccagtg
atgagaatactacgtaagctagacatgaagactgatgtgttatcttgtaaagacattaca
gagttcctcgataatagataccatgttaatctatcagaagatacactggcttatttactc
agatatcttaagaatgaagacaatatgataatgttccagatctttaaccagtttctaaaa
gttgttgtgccaacttgtgccagtactgtagaattgagagaaggaagtaagaatgaatta
agagagacagatagtaaagatataaaggatgaatgtaataatgataatcaaacagtacta
aaacaagctatcagtaaaatacgagatggaccccctagtatatcttctatatgctgttat
acttttcttaatacatcaaatggactatacagtgtggatgtatcgagtaataatagtttg
atatcagctggttttgaagactctaccatatccttgtggagtttagatcccgatttaatc
cataccaatccattcctatctaatcctgctgttataactctagctgttgatcattgtact
ggtagtgatgatagtaataacttgtcacagagaaaaaaagatgttgaaactatcaaacta
cgaggtcataatggtgctgtttataaaacctgttttacccctgattctcaatatttactc
tcagcttccctggataactctgtgaggttatgggatctctccagtcacagtaatgtggtg
ttgtacagaggtcatagttcagctgtttggtctctggatacaagtggcttgggatatttc
gtcagttgttctcaagatagaacagccaaactgtggtcatatgacagaaattatccaatc
agatcctttattgggcatacttatgatgtggatgtggtgaaattccatcccaacagtaac
tacgtagcaacgggttctggggatagaactatcagattgtggagtttacaagatggccgc
tgtgtccgtctgctccagggtcatcacagttcaatattgtctttggccttttcaccaaac
ggtcaatatctagcttctgctggagaagaccggcgtataaagatatgggatttgagctct
ggtacattgtttaaagaactacaaggacacagtgatacagtctacagtctaaacttcaat
ccagacagtactatattagcatcaggaggtctggactgctgtgttcgactctgggatgtt
aggaagaacagagaggtcaagtcagagttgaaacctagtggcatcagtgataatcaatct
tctccagaacttcatggaattttctcaactaagtctacttccattttgttcctgcgattc
tctaaaaataatgttttacgagtagcagggaatattttatga

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