Lottia gigantea (owl limpet): LOTGIDRAFT_237809
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Entry
LOTGIDRAFT_237809 CDS
T03273
Name
(RefSeq) hypothetical protein
KO
K14323
protein CASC3
Organism
lgi
Lottia gigantea (owl limpet)
Pathway
lgi03013
Nucleocytoplasmic transport
lgi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lgi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
LOTGIDRAFT_237809
03015 mRNA surveillance pathway
LOTGIDRAFT_237809
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lgi03019
]
LOTGIDRAFT_237809
Messenger RNA biogenesis [BR:
lgi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
LOTGIDRAFT_237809
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
20250560
NCBI-ProteinID:
XP_009046121
JGI:
237809
UniProt:
V4AZM9
LinkDB
All DBs
Position
Unknown
AA seq
1000 aa
AA seq
DB search
MADRRRRRGSLENENNDSNPVVRKSECSKMEIIFIVNFWKFSEYSMESEHGDEEQAELSE
YESADEEKQGKEEETESEEETETETESEEEDDDDDDGQEIDVVIEDDEWVDEERQSGDGE
EQPDSRDVDDDEDRKNPAFVPRKGAFYEHDLRLGDAKPPKEEDGERPKKKLWKDDGKWLH
DGYNEALQGPKSTEELVDIYGYDVRAGSHPPEYRPRPRRGGTGRGRRQNHKLGDFVPSER
SGGNSDRDYQRSKSEETEYIPMEYRSPQSYRATDTNDSRPSKSQSYNNNRHRDRTYNDNN
QDNRYKGDNYQSDYSNKRDNSFSHRNKGDNSYRKSDNYIDYRNKGDNQGEYENRDNTSNY
RKKDNNYQSDHKNRGNDYQSNYRNKGDNYQSNYDKSQDFRNAPNNQGQYNNYNDQGDYHD
NYRGRGRRGRGVGRGRGQRRHDQEENNSGSVNVPRQFTNSSYKSPENGDQTHFEANDGAD
INISNKENVQTISVTITNKTTEKAYESETRRMKYVGGKPYIQEEIRNAVEKENMAVISPP
ITSNSSAEMEKSGQVVNKAGKIHQSTGGSIKADNSLQGRPKRYSSQRQRTVPDNTYNKQQ
VADSSAYYNQASAYPNNQYYPGDSQSTTSGPDSPAGYQHQQQPILPVQPSIPYPHPVSSA
PRMYSPAPPAIATPVITPNVSLPTPHPTMIPPPNYLGQGPVIYGAAPPGINPPPAFPVPL
GYTGPNPPQQIQSPPSQQPEVYRGGTIYYPPELQQTNPHRSPVRRTKSAIPIVKPQEKKD
GAGTQSEVEYIRDDEQSVSDDVPLPVEDTEVFKKELSEISSALISLEGELRAGSTKVRQK
EEDLKNLDLQKKLDSYLQSEESTVNVPKEHLKSGASQTIEDINLNSQTEGESFNVAQKGD
ALDLGSIKTEIDAIKTESVQSVSGSNTDQTEKNTLKDLPSEISDAKHIVNDNSPSDTTVK
ESVGNVSSPLASEYGGLVDTKSDIETKTETSTDKSSPIDN
NT seq
3003 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccgacgaagacggcgaggttcgcttgaaaatgagaataatgattcaaaccct
gttgttagaaaatccgaatgttctaaaatggagattatttttatagttaatttctggaag
tttagtgaatacagtatggaaagtgaacatggagatgaagaacaggctgaattatcagag
tatgaaagtgcagatgaagaaaaacaaggcaaggaagaggaaacagaaagtgaagaagaa
acagagactgaaactgaatctgaagaagaagatgatgatgatgatgatggccaagaaata
gatgttgttattgaagatgatgagtgggttgatgaagaaagacaaagtggagatggcgag
gaacaaccagattctcgagatgttgatgatgatgaagacagaaaaaacccagcttttgta
cccagaaagggtgctttttatgagcatgatttacgattaggtgatgcgaagccaccaaaa
gaagaagatggagaaagacctaaaaagaagttatggaaagatgatggtaaatggttacat
gatggttacaatgaagctcttcaaggtccgaaatcaactgaagaacttgtagatatatat
ggttatgatgttagagctggtagtcatccaccagaatatagaccccggcctcgtagagga
ggtacggggagaggaagaaggcaaaaccataagctcggtgattttgtaccatctgagcgg
tctggtggaaattcagacagagattatcagagatctaaatcagaggagactgagtacata
cccatggaatacaggagtcctcaatcttacagggcgactgacacaaatgactccagaccc
tcgaaatctcagtcatataataataatcgccacagagacagaacttataatgataataat
caggataacagatacaaaggagataactatcaatctgattattccaataagagagacaac
tctttttcccacagaaacaagggtgacaattcctatcgtaaaagtgataattatattgat
tatagaaacaaaggagataatcaaggtgaatatgaaaatagagacaatacttcaaattac
cgtaagaaagataataattaccagtctgatcataaaaacaggggaaatgattaccagtct
aactataggaataagggagacaattatcaatctaattatgataaatctcaagatttccga
aatgccccgaataatcaaggccagtataacaattataacgatcaaggtgattatcatgac
aactatagaggtcgtggaaggagaggtcgtggtgttggacgaggacgaggtcaaagaaga
catgatcaggaagagaacaattctggatctgttaatgtgccaaggcagttcactaactct
agttacaagtctcctgaaaatggtgaccagactcattttgaagctaatgatggagcagat
atcaacatctcaaataaagagaatgttcagaccatcagtgtgacaatcaccaataaaaca
acagagaaagcatatgaaagtgaaactagaaggatgaaatatgttggcggtaaaccatat
atacaggaagagattaggaatgctgttgagaaagaaaatatggcagtcattagtcctcca
attacatcaaactcttcggctgaaatggagaaatctggtcaagttgtcaacaaagctggt
aaaattcatcaatctacaggaggtagtattaaagcagacaatagtttacagggtcgacct
aaacgatattcctcacaacgtcaacgtacagtccctgataatacttataataaacaacaa
gttgctgactcttctgcatattataatcaagcatcagcatatcccaacaatcaatattat
cctggtgactcacaatcaacaacatcaggtcctgactcacctgcaggttatcaacatcaa
caacaaccaatattaccagtacaaccatctataccttatcctcatccagtgtcctcagca
ccgagaatgtattcacctgccccaccagcgatcgctacaccagtaataacacctaatgtc
tccttaccaacccctcatcctacgatgattcctccaccaaactacctgggacaggggcca
gttatatatggtgctgcacccccggggatcaacccaccacctgcttttcctgttcctcta
ggctacactggacctaatcctcctcagcaaattcagtcacctccatcacaacaaccagag
gtatacaggggaggaaccatttattatccaccagagcttcaacagaccaacccacatcgg
tctccagttagacgtactaaatcagctatacctatagtcaagccacaggagaaaaaggat
ggagctggtacacaaagtgaagtagagtatataagagatgatgaacaatctgtatctgat
gatgttccgttaccagtagaagacacagaagtctttaaaaaagagctcagtgagatttca
tctgctcttatcagtctagagggcgaacttcgtgctggaagtactaaggtacggcaaaaa
gaggaagacctgaaaaatttagacttgcagaaaaagttagattcctatctgcaaagtgag
gaatcaacagtgaatgtacctaaagaacatcttaaatctggtgcatcccaaaccatagaa
gatataaacctgaattcccaaacagagggtgaatcattcaatgtagcgcaaaaaggtgat
gctttagatttaggctccattaagactgaaatagatgcaattaaaactgaaagtgttcaa
agtgttagtgggtcaaatacagaccagacagagaaaaatacattaaaagacttgccaagt
gaaattagtgatgctaagcatattgtgaatgataactccccaagtgacaccactgtgaaa
gaaagtgtagggaatgtaagcagccctctggctagtgaatatggtggtttagtagatacc
aagtcagacattgaaactaaaacagaaacttcaacagataaaagttcacctattgataat
taa
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