Leguminivora glycinivorella (soybean pod borer): 125225697
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Entry
125225697 CDS
T09956
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
lgly
Leguminivora glycinivorella (soybean pod borer)
Pathway
lgly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lgly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125225697
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lgly03019
]
125225697
03041 Spliceosome [BR:
lgly03041
]
125225697
03009 Ribosome biogenesis [BR:
lgly03009
]
125225697
03016 Transfer RNA biogenesis [BR:
lgly03016
]
125225697
Enzymes [BR:
lgly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125225697
Messenger RNA biogenesis [BR:
lgly03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
125225697
Spliceosome [BR:
lgly03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
125225697
Complex C
U4/U6.U5 tri-SnRNP related factors
125225697
Ribosome biogenesis [BR:
lgly03009
]
Eukaryotic type
Pre-60S particles
Helicases
125225697
Transfer RNA biogenesis [BR:
lgly03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
125225697
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
ATPase_2
Motif
Other DBs
NCBI-GeneID:
125225697
NCBI-ProteinID:
XP_047985484
LinkDB
All DBs
Position
4:complement(9541607..9555548)
Genome browser
AA seq
1032 aa
AA seq
DB search
MADINSLFDCFDEPAQNAASIQLPNVKNEEDISETTEEKSVINNKRAHEQVEYADTSKRL
KTDEDEADLISDLNLEALHSRIVIHTLETHEGCTHEVAVPPNQEFVPLAQPTSEPAKQYS
FILDPFQKEAILCIDNLESVLVSAHTSAGKTVVAEYAIALSLKNKQRVIYTTPIKALSNQ
KYREFSEEFHDVGLITGDVTINPSASCLIMTTEILRNMLYRGSEIMREVGWVVFDEIHYM
RDKERGVVWEETLILLPDNVHYVFLSATIPNARQFAEWVCRLHSQPCHVVYTEYRPTPLQ
HYIFPAGGDGIHLVVDEKGQFKEDNFNTAMTVLGNAGDAGKGDQKGRRGGPRGGPNTNIF
NIVKMIMERNFAPVIVFSFSKKDCEAYAMQMAKLDFNTLEEKKLVDEVFNNAMDVLSEED
RKLPQVENVIPLLRRGIGIHHGGLLPILKETIEILFGLGLIKALFATETFAMGLNMPART
VVFTSCQKFDGKEMRFLTSGEYIQMSGRAGRRGLDDKGIVILMIDQKVTPSVVKDMVQGK
ADPINSAFHLTYNMVLNLLRVEEINPEYMLERSFFQFQNQAAIPDLIDKVKMKQKEYNSV
TVEQEHSIASYCNIRSQLDMLGSQFRSVITRPEYLKPFLQPGRLVKVKTEKYEYDWGIIV
NFRHKTQGKGKKGKGDDNPLSSEAVIVVDILLHVKKSSGDDAETNVPCPPGETGDIEVVP
VLHTLIHQISSLRVYYPKDLRPADSRKSVLKTIGEVKKRFPEGPPLLNPIKDMKIDDPVF
KECVERIKQLEERLYAHPLHADKNRAAMQAAHERKLEIYDELTQAKAELRKAKSILQMDE
LKKRKRVLRRLGYCTAADVIELKGRIACELSSADELLLTELIFNGVFNALTSSQSAALVS
CFVCDENSTQSSATGEEMRGVLRQLQEYARRIAKVSIEAKMDLDEDNYVGKFKCTLMDVV
HSWSKGASFLEICKMTDVFEGSIIRCMRRLEEVLRQLCQAAKNIGNTDLENKFSEAIKLL
KRDIVFAASLYM
NT seq
3099 nt
NT seq
+upstream
nt +downstream
nt
atggctgatataaacagtttgtttgattgctttgacgagccagctcaaaatgcagcctca
attcaattgccgaacgttaaaaatgaagaagatatttcggagacaaccgaagaaaagagt
gtaatcaataataaacgagctcatgaacaagttgaatatgccgatacgtcaaagaggctc
aaaacagacgaagacgaggctgatttaatatcagatttaaacttagaggctctccactct
cgtatagtcattcatacgctagaaactcacgaaggttgcacacatgaagtggcagtgcca
ccaaatcaggagtttgtgccacttgcacaacccacttctgagccagctaagcagtactct
ttcatactggaccccttccagaaagaagctattttgtgtatagataatttagaatcagtg
cttgtgtctgctcacacttctgcaggaaaaactgttgtggctgagtatgccatagctcta
tcactaaagaataagcagagggtaatctacacaactcccattaaggccctctccaatcag
aaataccgggagttctctgaagaattccatgatgtgggcttaattactggtgatgttact
atcaacccttcagcttcttgcttgattatgactactgagattctcagaaacatgttatac
agaggatcagagatcatgcgtgaagttggttgggttgtatttgatgaaatccattacatg
agagacaaggaaagaggtgttgtgtgggaagaaacactaatattgctgccggacaatgtc
cactacgtattcctatcggccacaattccgaatgcgcgacagttcgcggagtgggtctgc
cgcctgcactcgcagccgtgccacgtggtgtacacggagtaccggcccacgccgcttcag
cactatatcttccctgcgggcggggacgggatacacctggtggtggacgagaagggtcaa
ttcaaagaagacaacttcaacacagcgatgacggtcctcggaaacgcgggcgacgcaggc
aagggcgaccagaaggggcggcgcggcggcccgcgaggcggccccaacactaacatattc
aatatagtcaagatgatcatggaacgcaacttcgcgccggttattgtgttcagtttcagc
aagaaagattgcgaggcgtatgccatgcagatggccaagttggattttaatacacttgaa
gaaaagaaactagtagacgaagtgttcaacaacgcgatggacgtgttatccgaagaggac
cgcaaactgccgcaagtggaaaacgtgatcccacttctgagacgcggcattggcatccat
catggtggacttctgcccatacttaaggagactattgagatattgttcggcttgggactt
attaaggcgctctttgctactgaaaccttcgccatgggactcaacatgcccgcgagaact
gttgtcttcacctcatgccagaaatttgacggcaaagaaatgagattcctgacatcaggc
gaatacattcaaatgtccggaagagccggtcgccgaggcttggacgacaagggtatcgtg
atcctcatgatcgaccagaaggtcacgcctagtgtggttaaggacatggtgcagggtaaa
gctgatcctatcaactcggctttccacctcacctataatatggtactgaacttgttgaga
gttgaggaaatcaatccggaatacatgttggagagaagtttcttccaattccaaaaccaa
gctgctataccagatttaattgacaaggtaaaaatgaaacagaaagagtacaactctgtc
actgtggagcaagaacactccatagcatcatattgcaacatcagatcgcagttggacatg
ctcggctcgcagttccggtccgtcatcacgcggccagaatatttgaagccttttctacag
cctgggagacttgttaaggtgaaaaccgagaaatacgagtacgactggggcatcatagtg
aacttcaggcataaaacgcaaggcaaaggcaagaagggcaagggagacgataacccgcta
tcctcagaggcagttatagttgtcgacatattgcttcacgtgaaaaagtcgagtggcgat
gacgcagagactaatgtaccctgtcctcccggcgagacaggagacatcgaagtggtccca
gtacttcacacactcattcaccaaattagttccctccgcgtatactacccaaaggaccta
cggcccgctgacagccggaaatccgtactgaagactattggagaagtgaagaaacggttc
cccgagggcccaccgctgcttaaccctattaaagatatgaagattgatgatcctgtgttc
aaagaatgcgtggagagaatcaagcagttggaagaaagactatacgctcaccccctccac
gcggacaagaatcgcgctgcgatgcaagcggcccacgaacgcaagctagaaatatacgac
gaactcacccaggccaaggccgagctgcggaaagccaagagcattttgcaaatggacgag
ctgaagaagagaaaacgagtgctgagacgacttgggtattgtacggcggctgatgttatc
gaactgaaagggaggatcgcctgtgaattgagcagcgcggacgaactcctgctaaccgaa
ctgatcttcaacggcgtgttcaacgcgctgacctcctcacagagcgccgcgctcgtcagc
tgtttcgtgtgcgacgagaacagcacgcagtcctccgccaccggcgaggagatgcgcggc
gtgctgcgacagctgcaggaatacgcccggaggatagccaaggtgtcgatcgaggctaag
atggacctggacgaggacaactacgtgggcaaattcaagtgcacgctcatggacgtcgtg
cactcctggtctaagggcgccagctttctggagatatgcaagatgactgatgtttttgaa
ggttccataatcaggtgcatgaggcgactggaagaagtactccgtcaactctgccaagcg
gccaagaacattggcaatacagatttggagaacaaattcagtgaagccataaaactgctc
aagagagacattgtattcgccgccagcttgtacatgtaa
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