Leguminivora glycinivorella (soybean pod borer): 125227494
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Entry
125227494 CDS
T09956
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
lgly
Leguminivora glycinivorella (soybean pod borer)
Pathway
lgly03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lgly00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125227494
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lgly03019
]
125227494
03041 Spliceosome [BR:
lgly03041
]
125227494
Messenger RNA biogenesis [BR:
lgly03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
125227494
Spliceosome [BR:
lgly03041
]
Complex B
Other components
Prp19-related factors
125227494
Complex C
125227494
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_12
TPR_15
TPR_8
Mad3_BUB1_I
NRDE-2
TPR_10
DHR-2_Lobe_A
PPR
ARM_TT21
ARM_TT21_C
Motif
Other DBs
NCBI-GeneID:
125227494
NCBI-ProteinID:
XP_047987778
LinkDB
All DBs
Position
6:complement(18261731..18264920)
Genome browser
AA seq
848 aa
AA seq
DB search
MPLLDGKEIEIFFSEEDLPYEEEILRNPFSVKHWLRYIEHKKGAPKHEINMIYERALKEL
PGSFKLWYNYLKLRRAQIRGRCITDPCYDHVNNCFERSLVFMHKMPRIWMDYCTFLTDQC
RITVTRKAFDSALRALPITQHHRIWPLYLSFLKKHNIPETAVRVFRRYLKLSPEDTEEYI
DYLISINKLDEAAIKLAQIVNNENFQSKHGKSNHQVWNELCELISKNPDKIHSLNVDAII
RGGLRRYTDQLGHLWNSLADYYVRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEE
LSLSKKMEEVAKKPSPSEDDDIDLELRLARFEYLMERRLLLLNSVLLRQNPHNVAEWHKR
VKLYEGKPHEIIDTYTEAVQTVDPKLAVGKLYTLWVGFAKFYEENDQIEDARLIFEKATQ
VSYAKVDDLASVWCEWAEMEIRHENYEEALKLMQKATVLPSRKVAYHDDTETVQMRLYKS
LKVWSMYADLEESFGSYKSCKAVYDHIIDLKIATPQIIINYGLFLEEHNYFEEAFRAYEK
GIALFKWPNVYDIWNTYLTKFLKRYGGSKLERARDLFEQCLEHCPAEFAKSIFLLYAKLE
EEHGLARHAMSVYERATTAVLPEQMFEMFNIYIKKAAEIYGVPKTRQIYEKAIETLPEEK
AREMCICFSEMETRLGEIDRARAIYAHCSQMCDPRITADFWNTWKEFEVRHGNEDTMREM
LRIKRSVQATYNTQVNMMSAQMLSSAAQAAGTISDLAPGMKDGMRMLEAKAAEMAVANKG
NIMFVRGETQGLKESADKVVNPDEIDIDEESGNSNDEDDDTVTAPVQKKEIPAAVFGGLV
PTTSKDSD
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atgcctttacttgatggtaaagagatcgaaatattttttagtgaagaagatttaccatat
gaagaagaaatattaagaaacccattctcagtgaaacattggcttagatatatagagcac
aaaaaaggtgcccccaagcatgagattaatatgatttatgaacgagctctgaaggagctg
cctgggtccttcaaactgtggtacaattacctgaagctcagaagagctcagatcagaggc
cgctgtataacagacccctgctatgatcatgttaacaactgctttgagagatcattggtc
ttcatgcacaaaatgccaagaatatggatggattactgtacttttttgactgatcaatgt
aggataacagtgacaagaaaagcttttgacagtgcattacgggcgttgccaattacacag
caccatagaatatggcctctgtacttgagttttttaaagaaacacaacattcctgaaact
gctgtaagagtgtttagacgttatttaaaattaagccctgaagatacagaagagtatatt
gattacctgatttccataaataaactggatgaagctgccatcaaacttgcacaaattgtt
aacaatgaaaatttccaatctaaacatggcaaatcaaaccatcaggtatggaatgagttg
tgcgaattaatctcgaaaaatccagacaaaatacattcactgaatgtagatgctattatt
agaggaggtctgaggcgctatacagatcagttgggacatttgtggaactctcttgctgat
tattatgtcagaagtggcttatttgaaagagctagagatatctatgaagaagctatacaa
actgtgactactgttagagatttcactcaagtttttgatgcttatgctcaatttgaagaa
ctaagtttaagcaaaaaaatggaggaggttgcaaaaaaaccaagcccttctgaagatgat
gatatagacttagaattgagacttgccagatttgaatatttgatggaaagaagattactg
ctcctcaattcagttcttttaagacaaaaccctcataatgtggctgaatggcataaaaga
gttaaactgtatgaaggaaaaccacatgaaattattgacacttacactgaagctgtacag
acagtagacccaaaacttgctgttggaaaactgtacactctatgggttggttttgctaag
ttttatgaagaaaatgaccaaattgaggatgctagattaatttttgagaaagcaacgcaa
gtgagctatgcaaaagtggatgacttagcatcagtttggtgtgaatgggctgaaatggaa
atcaggcatgagaattatgaagaagcactgaaactaatgcaaaaagcaactgtgctgccc
agcaggaaagttgcttatcatgatgatacagagacagtccagatgcgtttatacaagtcc
ttgaaagtatggtctatgtatgcagatcttgaagaaagttttggtagttacaagtcttgc
aaagctgtttatgaccacattattgacttgaaaattgctactcctcagataataataaac
tatggcctcttcttagaggagcataattattttgaggaagcattcagagcttatgaaaag
ggcattgcactcttcaagtggcccaatgtatatgatatctggaatacatatttgacaaag
tttttgaaaaggtatggtggctctaaacttgagagagccagagatttgtttgagcaatgt
cttgaacactgccctgcagagtttgcaaagtctattttcctactatatgcaaaattggaa
gaagaacatggcctagctagacatgccatgtcagtttacgagcgtgcaaccactgccgtt
ttaccagagcaaatgtttgagatgttcaatatatacatcaagaaagctgccgaaatttat
ggtgttccaaaaacacgtcaaatatatgaaaaggcgatcgaaacattaccagaagaaaaa
gcgagagagatgtgtatttgtttctctgagatggaaactcgtcttggagaaatagataga
gctcgagccatatatgcacattgcagccaaatgtgtgatcctagaataactgcagacttt
tggaatacatggaaagaatttgaagtccgtcatggaaatgaagatacaatgcgtgagatg
cttagaataaagagaagcgttcaggccacatacaatacacaagtgaatatgatgtctgct
caaatgttaagttctgccgcacaggcagcaggcacaatttctgacttggcaccaggaatg
aaggatggcatgagaatgttagaagccaaagcggctgagatggctgttgcaaacaaagga
aatattatgtttgtgcgaggcgaaactcaggggcttaaggagagtgcagataaggtggtc
aatcctgacgaaattgacattgatgaggagtctggaaatagtaatgatgaagatgatgat
actgtaacggctccagttcagaagaaagaaataccagctgctgtatttggagggcttgta
cctactactagtaaagatagtgattaa
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