Leguminivora glycinivorella (soybean pod borer): 125227733
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Entry
125227733 CDS
T09956
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-processing factor 19
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
lgly
Leguminivora glycinivorella (soybean pod borer)
Pathway
lgly03040
Spliceosome
lgly04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
lgly00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125227733
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
125227733
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lgly03041
]
125227733
04121 Ubiquitin system [BR:
lgly04121
]
125227733
03400 DNA repair and recombination proteins [BR:
lgly03400
]
125227733
Enzymes [BR:
lgly01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
125227733
Spliceosome [BR:
lgly03041
]
Complex B
Other components
Prp19 complex
125227733
Complex C
Prp19-CDC5 complex
125227733
Ubiquitin system [BR:
lgly04121
]
Ubiquitin ligases (E3)
U-box type E3
125227733
DNA repair and recombination proteins [BR:
lgly03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
125227733
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Prp19
Beta-prop_EML_2
WDR55
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
ANAPC4_WD40
Beta-prop_EIPR1
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
Beta-prop_HPS5
WDR90_beta-prop_4th
NBCH_WD40
Beta-prop_SCAP
Beta-prop_Vps41
Beta-prop_Nup120_160
Beta-prop_IFT122_1st
Beta-prop_DCAF4
Beta-prop_RIG_2nd
Beta-prop_SPT8
U-box
eIF2A
Beta-prop_DCAF12
WD40_like
Cytochrom_D1
RMC1_N
PAS_11
Motif
Other DBs
NCBI-GeneID:
125227733
NCBI-ProteinID:
XP_047987997
LinkDB
All DBs
Position
7:1060143..1068259
Genome browser
AA seq
504 aa
AA seq
DB search
MALYCAISNEVPEVPVVSPSSGSVFERRIIEKYIIENGVDPISGKELRVEDLIEIKTPPI
VKPKPPSATSIPATLKSMQDEWDALMLHAFTQRQQLQTARQELSHALYQHDAACRVIARL
TKEVTAAREALATLKPQAGIAQQPQHPTEAAGAGAGAGAAGGPAAVGMSAGVVARLQERA
TALTQERKRRGRTVPEGLASPDQIRAFLTVASHPGLHSASVPGILALDINPTDHSRILTG
GNDRNATVFNKDTEQVVAILKGHTKKVTRVIYHPDEDTVITASPDHTIRVWNVPTSQTTV
ILRSHDGPXTGLSLHPTGDYVLSTSTDQHWAFSDIRTGALLTKVGDSSGVSLTTAQFHPD
GLIFGTGTENSQVKIWDLKEQSNVANFPGHVGPVTSISFSENGYYLATAAEDACVKLWDL
RKLKNFKTIQLDEGYAIKELCFDQSGTYLAVAGSDVRVYLCRQWQELKVFNEHTAAATGV
RFGRHAQCLASTSMDRTLKLYGIE
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atggcgttatactgtgcaatatcgaatgaggtgccagaggtgccagtggtgtctccatcg
tcgggctccgtgttcgaaaggcgcatcatcgagaagtacattatagaaaatggcgtcgat
cccatcagtggcaaggagctgcgagttgaagatcttattgaaatcaaaacccctccaatt
gtgaagccaaagcctccaagtgccacatctattcccgccacactgaaaagcatgcaggat
gaatgggatgccctgatgctgcatgccttcacgcagcgccagcagcttcagacagccaga
caggagctgtctcacgccctgtaccagcatgatgcggcgtgtcgtgtgatagcgcgctta
accaaggaggtgacggcggcgcgagaagccctcgccactctcaaaccgcaggccggcatc
gctcagcaacctcaacacccgacggaggcggcgggggcgggggcgggggcgggggcggcg
ggcgggccggcggcggtgggcatgtcggcgggcgtggtggcgcggctgcaggagcgcgcc
acggcgctcacgcaggagcgcaagcgccgcggccgcaccgtgcccgaggggctcgcctcc
ccagaccagatccgcgccttcctcaccgtggccagccatcccggtctccactcagccagt
gtgccaggtatcttggctttggatatcaaccccacggaccacagccgcattctcactgga
ggaaacgatcgcaatgctaccgtcttcaacaaggacacagaacaagtggttgctattctc
aagggtcacacaaagaaggtcactcgggtcatctaccaccccgacgaagacaccgtcatc
acggcctcgcctgatcacactatccgtgtatggaatgtgcccacatctcagacaacggtg
atcctgcgctctcacgacggcccgntgacgggtctctccctgcatcctactggcgactac
gtgctctccacttccaccgaccaacactgggccttctctgatattcgcaccggcgccttg
ctcaccaaggtcggtgactcctccggcgtcagcctaaccacagcgcagttccatcctgac
ggcctcatcttcggcaccggcacagagaactcccaggtcaagatctgggacctcaaggag
cagagcaacgtcgccaacttccccgggcacgtcggccccgtcacctccatctccttctca
gagaacggttactacctagctacggccgctgaggacgcttgcgttaaactatgggatcta
cgtaagcttaagaactttaaaactatacaactagatgaagggtatgcgattaaggagctg
tgcttcgaccagagcggtacatacttggctgttgctggttcggatgtgcgcgtgtacttg
tgcaggcagtggcaggagttgaaggtgtttaatgagcacacggcggcggccacgggagtc
aggttcgggagacacgcgcagtgcctcgcgtccactagtatggatcgtacgctgaagttg
tacggtattgagtaa
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