Leguminivora glycinivorella (soybean pod borer): 125231797
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Entry
125231797 CDS
T09956
Name
(RefSeq) LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor subunit 4
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
lgly
Leguminivora glycinivorella (soybean pod borer)
Pathway
lgly03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lgly00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125231797
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lgly03021
]
125231797
03019 Messenger RNA biogenesis [BR:
lgly03019
]
125231797
Transcription machinery [BR:
lgly03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
125231797
Messenger RNA biogenesis [BR:
lgly03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
125231797
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
Torus
zf-CCCH_4
zf-CCHC
zf-CCCH_2
zf-CCCH_3
Nab2-like_zf-CCCH_
zf-CCHC_2
zf-CCHC_3
Motif
Other DBs
NCBI-GeneID:
125231797
NCBI-ProteinID:
XP_047993334
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All DBs
Position
12:4747918..4757734
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AA seq
293 aa
AA seq
DB search
MEVLVANVDHIKFDIDFALDEQYGALPLPFPGMDKSTAAVCEFYSQPSGCTNGPQCPYRH
VRGDRTVVCKHWLRGLCKKGDQCEFLHEYDMSKMPECYFYARFNACHNKECPFLHIDPES
KIKDCPWYDRGFCRHGPHCRHRHVXRVLCTNYLAGLCPDGPSCKYMHPRFELPAPPEQTK
DAKRLPVCHYCSEVGHKASSCNKIPQEQREAAQRQEEARYRALGYIKPANENETSESPRM
QRMMHKPLEEVTCFKCGTKGHYANRCPKGHLAFLSQNQNQQNQNQWLRDKQQQ
NT seq
882 nt
NT seq
+upstream
nt +downstream
nt
atggaggtcctagtcgctaacgtagatcatatcaaattcgacatagattttgcattagac
gagcaatatggagctttaccgttgccgtttcccggaatggacaagtccacggcagcagta
tgtgaattttacagtcaacctagtggatgtacaaatggacctcaatgtccctacagacac
gtccgcggcgaccgcacagtggtctgcaagcattggctgcgcggtctgtgtaagaagggc
gaccagtgcgagttcctccacgagtatgacatgtccaaaatgccggaatgctacttctac
gcccgttttaatgcctgtcacaataaggagtgtccgttcctgcatatagaccccgagagc
aagatcaaagactgtccctggtacgaccgcggtttctgccggcacgggcctcactgccgc
caccgtcacgttncgcgcgtcctctgcaccaactacctggccgggctctgcccagacggg
ccctcctgcaagtacatgcacccgcgtttcgagctgcccgctcccccggaacagacgaag
gatgctaagcggttgccagtttgtcattattgttccgaagtcggacataaggcgtcatcc
tgtaataagataccgcaagagcaacgcgaagccgcccaacgccaagaggaggcccgctac
cgagccctcggctacatcaagcccgccaacgaaaacgagacctccgagagccctcgcatg
cagcgcatgatgcacaagcccctcgaagaggtcacctgcttcaagtgcgggaccaaagga
cactacgccaaccggtgcccgaagggacacctcgccttcttgagtcagaatcagaaccag
cagaaccaaaaccagtggctgagggacaaacagcagcagtga
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