Leguminivora glycinivorella (soybean pod borer): 125232680
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Entry
125232680 CDS
T09956
Name
(RefSeq) probable cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
lgly
Leguminivora glycinivorella (soybean pod borer)
Pathway
lgly03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lgly00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125232680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lgly03019
]
125232680
Messenger RNA biogenesis [BR:
lgly03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
125232680
U7-dependent histone pre-mRNA processing factors
125232680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
MBL_MAP1B
Motif
Other DBs
NCBI-GeneID:
125232680
NCBI-ProteinID:
XP_047994391
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Position
13:3523757..3566642
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AA seq
729 aa
AA seq
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MTSIIKLHCLSGDGDETPPCYVLQVDEFKFLLDCGWDEKFDMEFIKELKRHINNIDAVLL
SHSDPLHLGALPYAVGKLGLNCPIYATLPVYKMGQMFMYDLFQAHKNVSDFDLFTLDDVD
AAFDSIVQLKYNQSVDMKGKGLGLRITPLPAGHSLGGTIWRIAAPGEEDIVYAPDFNHKK
ERHLNGCEIERIMRPSLLLLGAMNADYVQPRRRLRDEKLMTTILSTLRGGGSVLVCTDTA
GRVLELAHMLDQLWRNKDSGLVAYTLLLLSNVSYNVVEFAKSQIEWMSDKLTRAFEGARS
NPFLLRHLQLCHSVIEVTRTPGPKVVLASFPDLECGFARDLFLQWAPNPQNSIILTHRSS
PGTLARDLIDNGGDRTLELVVRRRVRLEGAELEEFMQQRAKVNNSVKEEVAGISSDSDSD
GDLEMWVVTGRHDIPVRHEARTTGCFKSNKRHHAMYPCHEDRARADDYGEVIRPEDYRLA
EVVDAEGEVRDVAPQPPPLQEPEEEEMEIPSKCLTTVRQVPIKASIQYIELEGRCDGESL
LRVVAQAKPRAIVGLRANHTALQTLRKYCETEGIEKIFTPERGETVDATTESHIYQVKLT
DAVMSSLSWKQAGGAELAWLSGVLQPRARPREPGAPEEEPSQDVVMSLEPGGEGAAHCAA
YINAVRLSELRAALARRGLAAEFSHGALECCNGTLAIRRLENGRVALEGVLSEEYYKVRE
LLYEQFAIV
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgacttcaatcatcaagttacactgcctctccggagatggagatgagactccgccgtgc
tatgtacttcaggttgatgagttcaagtttctgctggactgtggatgggacgagaagttc
gatatggagttcataaaagagctcaagagacacataaataacatagacgcagtcctcctt
tcacattccgacccactgcacctcggagccctaccatacgcagtgggtaaactgggtctg
aactgccccatctacgccacactgccggtgtacaagatggggcagatgttcatgtacgac
ctgttccaggcacacaagaatgtgtcggactttgatttgtttacgcttgacgatgtggat
gctgcgtttgatagtattgtgcagttgaagtataatcagagtgttgatatgaaaggcaaa
ggtttaggtcttcgcatcacgcccctaccagccggtcattccctcggtggcacaatctgg
cgcatagctgcccctggcgaagaagacatagtgtacgctccagatttcaaccacaagaag
gagcggcatctcaacgggtgtgagatagagaggattatgcgaccttcgttactgttgctc
ggggctatgaatgcggactatgtgcaaccgagacggaggctaagagatgagaagctcatg
acaacaattttaagcaccctccgcggcggcggcagcgtgctagtctgcacagacacagcg
ggcagagtgctcgaactagctcacatgctagaccagctctggcgaaataaggactccgga
ttggtcgcatacactttactactactttccaacgtcagttacaacgttgttgagtttgct
aagtcacagatagaatggatgagcgacaaactgactcgcgccttcgaaggggcgcggagc
aacccattccttcttcgtcatctgcaactctgccattctgtgattgaggtgacccgaact
ccagggccgaaagtggtgctggcttccttccccgacctggagtgcggtttcgccagagac
ctgttcctgcagtgggctcccaaccctcagaactccatcatactcacacacagatcctcg
ccgggaactttagcccgagatctcatagacaacggcggagacagaacgttagagttagta
gtgcgacgaagagtcaggctcgaaggcgcggagttagaagaattcatgcaacagcgcgcc
aaagtcaacaactctgtcaaagaagaagtagccggcatatcatcagactccgattccgat
ggcgacctagaaatgtgggtcgtgaccgggcgacacgacatcccggtccggcacgaagct
cggacgaccggctgtttcaagagtaacaagcgccaccatgctatgtatccgtgtcatgaa
gatagagcacgggctgatgactatggagaagttatacggcccgaagactaccggctagca
gaagtggtggacgcagagggagaagtacgcgatgtggcgccgcagccgccgccgctgcaa
gaaccagaagaagaagaaatggaaatccccagcaaatgcctaacgacagtccggcaagtt
cctataaaggcgtccatccaatacatagagctagaaggccggtgcgacggcgaatcgcta
ctccgagtagtggcacaggcgaagccgcgggctatagtaggtttacgggctaaccacact
gctctacaaactcttaggaaatattgcgaaactgaaggcatagagaaaatattcacaccg
gaacgcggcgaaactgttgacgccaccacagagtctcatatctaccaggttaaactaaca
gacgctgtgatgagctcattgtcatggaagcaagctggaggtgcagagttagcgtggctg
tctggcgtgttacagccgcgcgctcgaccgagggaacctggagcgcccgaagaagaacca
tcacaggacgtagtgatgtctctcgagcccggcggcgaaggcgcggcgcactgcgcggcc
tacatcaacgctgtgcgtctgtcagaactgcgcgctgctttagctaggagaggattagcc
gctgagttctctcacggagctttggagtgttgtaatggcacactcgctataaggaggttg
gagaacggccgcgtggcactggagggtgttctttcagaagagtattataaagtacgggag
ctgttgtacgaacagttcgctatcgtgtaa
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