Leguminivora glycinivorella (soybean pod borer): 125233638
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Entry
125233638 CDS
T09956
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
lgly
Leguminivora glycinivorella (soybean pod borer)
Pathway
lgly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lgly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125233638
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lgly03019
]
125233638
Enzymes [BR:
lgly01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
125233638
Messenger RNA biogenesis [BR:
lgly03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
125233638
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
RRM_1
Motif
Other DBs
NCBI-GeneID:
125233638
NCBI-ProteinID:
XP_047995663
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Position
14:16134961..16182719
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AA seq
641 aa
AA seq
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MEITRKNFKESLPIVSDSIKRADFLVIDAEFTGLINGPDVTMFDSPAEYYLRTMMGCKDF
LLIQYGLCAFYWDEDAKQYMNDAYNFYLFPRGRPGPERMFLCQSSSLDFLSAQGFDFNKL
IRDGIPYMTEPTETRLREMLTERQKSYANDTNIIPVPEENKQQIEDICKKVREFLDEQKS
DEMEIDRCNAFIRRLLFQELGSRFKGEAYVETKVLENKNRVLKVTRVTPENAAQDREAMK
KDKEWEEFEEAVGFSKVARMISQSEKLVVGHNMLLDVIHTLNHFFQPLPPDYPSFKEFAH
CMFPSLLDTKYMSSLPPFKDKVNSSVLQHLLVTLSEPPFGLPTVGSSPGRGYTLSNDKSH
EAGYDAFVTGLCFLAMRAHVARMRGEDGAGGAGAGAALRPFLNKLFLTKTAYQDSPYMNI
DGPDPSPSRDHVFHLTFPMEWQRNDINQLFSPFGPIVVQFIDDTSAYVALSRREQARDVM
RTLARHKRTTLVPYAKFKHMASQDSKHWRKEDDTIPETPRLRQAASTTSVSPAPPKSPVK
DVEPIKERARSNSLTSQPPSRKRTSSGMFQVDETEPPPKKPEPSRKRPEVNGKKDSSEPK
KGKQDKDKDTAKKQEKKVIERFDEEAKTQCVSAFKESDSWD
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atggaaattactcgcaaaaattttaaggaatccttgcctattgtgagtgattcaataaag
agagcggactttcttgtgatagatgcggagtttacggggttgataaatgggccggacgtc
actatgttcgattctccggcggagtactacttacgaactatgatgggttgtaaggatttc
ttgttgatccagtacgggttgtgtgcgttctactgggacgaggatgcgaagcagtacatg
aacgacgcgtacaatttttacctgttcccgcgcgggcggccgggcccggagagaatgttt
ctttgccagagctcgagtttggattttctatcagcccaggggtttgatttcaacaagcta
attcgagacggcatcccgtatatgacggagcccacagagacacggctaagagaaatgctc
acggagagacagaagtcgtacgccaatgacactaatatcatcccagtgccagaggagaat
aaacagcagattgaagacatttgtaaaaaggtccgtgagtttctcgacgagcagaaatcg
gacgagatggagatagaccgctgcaatgcgttcatcagacggctactcttccaggagctg
ggctcgcggttcaagggcgaagcgtatgtggaaactaaagtgctggagaacaagaacaga
gttctaaaagtgactcgagtaacgccagagaacgcggcgcaggatcgagaagcgatgaag
aaagacaaggaatgggaggagtttgaggaggcggtcgggttctctaaggtggctcggatg
atcagccagtcggagaagctggtagttggacacaacatgttgttagacgtgatccacacg
ctcaaccacttcttccaaccgctgcctcctgactacccaagctttaaagaattcgctcac
tgcatgttccctagcctactagacacaaaatacatgtccagtttgccgcccttcaaggac
aaggtgaattccagcgtgctacagcacttactcgtcaccctatcagaaccgcctttcggc
ctgcccacagtcggatcatccccaggtcgaggctacaccctctccaacgacaagtcccac
gaggcgggctacgacgcgttcgtaacggggctctgcttcctggcgatgcgcgcgcacgtg
gcgcgcatgcgcggcgaggacggggccgggggcgcgggcgcgggcgcggcgctgcgcccc
ttcctcaacaagctgttcctcaccaagaccgcctaccaggactcgccctacatgaacatc
gacggccccgacccttcaccatccagagaccacgtgttccacctcactttccccatggag
tggcagaggaatgacatcaatcaattatttagtccttttggtcccatagtggtacagttc
atcgacgacacgtctgcttacgtggcactctcgcgccgcgagcaagcgagagacgtgatg
cggacgctagcgagacacaagcggaccacgctcgtgccgtacgccaagttcaaacacatg
gcttcacaagacagcaagcactggcgtaaggaggacgacacaatacctgagacccccaga
ctacggcaagccgccagcacaacaagcgtgtctcccgctccaccaaagtctcccgtcaag
gatgttgagcccatcaaagaacgcgcgcgcagtaacagcttgacgtcacaaccgcccagc
agaaagaggaccagctccggaatgttccaggttgatgaaacagagccaccgccaaagaag
cccgagccctcccgaaagaggcccgaagtcaacggcaagaaggactccagtgaacctaag
aagggaaagcaagacaaggataaagataccgcgaagaaacaagaaaagaaagtgatagaa
cgattcgatgaagaggccaagacgcaatgcgtgtcagccttcaaagagagcgatagttgg
gattaa
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