Leguminivora glycinivorella (soybean pod borer): 125233832
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Entry
125233832 CDS
T09956
Name
(RefSeq) regulator of nonsense transcripts 1-like isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
lgly
Leguminivora glycinivorella (soybean pod borer)
Pathway
lgly03013
Nucleocytoplasmic transport
lgly03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lgly00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125233832
03015 mRNA surveillance pathway
125233832
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lgly03019
]
125233832
Enzymes [BR:
lgly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
125233832
5.6.2.5 RNA 5'-3' helicase
125233832
Messenger RNA biogenesis [BR:
lgly03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
125233832
mRNA cycle factors
Common to processing body (P body) and stress granule
125233832
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
DEAD
UvrD-helicase
NAT10_TcmA_helicase
NPHP3_N
AAA_16
AAA_22
SRP54
nSTAND3
nSTAND_NTPase5
UvrD_C_2
zf-B_box_Trim66
Motif
Other DBs
NCBI-GeneID:
125233832
NCBI-ProteinID:
XP_047995922
LinkDB
All DBs
Position
15:18217080..18258656
Genome browser
AA seq
1039 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEEADLIGADTQGSEFEFTDFTLPSQSQTQASQHDHGLTTTNQ
VNGLGRLDLSSKVSSVTNAIAELQFEEEDEALYSSKELPDHACKYCGIHDPATVVMCNIC
NKWFCNGRGNTSGSHIINHLVRAKHKEAALHRDGPLGETLLECYSCGARNVFVLGFIPAK
ADSVVVLLCRQPCAAQSSLKDMNWDQEQWKPLISDRAFLSWLVKVPSEAEQMRARQVTPQ
QIGRLEELWRDNVDATFQDLEKPGVDEEPHQVLLRYEDGYQYQNIFGPLVKLEADYDKRL
KESQTQEGIEVRWDVGLNKKTIAYFTLAKTDSDMKLMHGDELRLRYVGELHKPWAGVGHV
IKVPDNYGDDVGLELKSGAGAPADCTASFVVDFIWKSTSFDRMQLALRKFAVDESSVSGY
IYRRLLGHEVDEVLFRVHLPKHFSAPNLPDLNRSQVYAVKHALQRPLSLIQGPPGTGKTV
TSATIVYQLVRQSGGPVLVCAPSNTAVDQLTEKIHRTGLKVVRLCAKSREAMESSVSFLA
LHEQARALGSADSELRKLTRLKEEAGELSAADERRYRALRRAAERRLLDAADVVCTTCVG
AGDPRVARMRFQSILIDEGMQSTEPECMVPVVLGARQLILVGDHCQLGPVVMCKKAAKAG
LSQSLFERLVVLGIRPFRLEVQYRMHPELSRFPSDFFYEGSLQNGVSAEERRLHKIDFPW
PRPDRPMFFYVTQGQEEIAGSGTSYLNRTEAANVEKLTTRFLKAGVRPEQIGIITPYEGQ
RSYLVQHMQYQGSLHAKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLSDPRRL
NVALTRAKYGLIVVGNPKVLSKQPLWNHLLAFYKERRVLTEGPLSNLKESAIQFAKPKKL
VNAQNPGSHFMSTSMFDAREAMVPGSIYDRARPLRDPLAYVGPERAALLNAPVPPAAFNM
RGPHTQRPLPGHMARGLGARRRPPRLSQEPLSQQAALSLSQGASQPEFSQESLAPDCPSQ
PDGLLSQDSTYQGGFRRQY
NT seq
3120 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtcgacgcgtatggaccgagctcccaaacgctcacattcctggatactgaagaa
gctgatcttataggagctgatactcaaggatcggagttcgagtttactgatttcacgctc
ccttcgcagagccaaactcaggcttcgcagcatgatcatggtctaaccactaccaaccag
gttaacggcttaggtcgtttggatctgagttctaaggtctcttctgttactaatgcgata
gcagagttgcaatttgaggaagaggatgaagcgctgtacagtagcaaagaactgcctgac
catgcttgcaagtactgcggtatccacgaccctgccaccgtagtgatgtgcaatatatgc
aacaagtggttctgcaatggccgtggcaacacctctggctctcatatcatcaaccaccta
gtgcgtgctaagcataaagaggcagctctccaccgcgacgggccactgggggagaccctg
cttgaatgctactcttgtggtgcaaggaacgtgtttgttctgggctttattcctgccaag
gccgactctgttgtggtgttgctgtgtcgtcaaccttgcgcggcacagagttccctcaag
gacatgaactgggaccaggagcaatggaagccattgatttcggaccgcgctttcctgtct
tggctggtcaaagtgccgtctgaagctgaacagatgagggcccgtcaagtgaccccgcag
cagatcggacgtctggaagaactgtggcgtgacaacgtggacgccaccttccaagacctg
gagaagccaggcgtggacgaggagcctcaccaggtgctgctcagatacgaagatggctat
caataccaaaacatcttcggcccactggtcaagcttgaagcggactatgacaagaggcta
aaagagtctcaaacgcaagagggcatcgaagttcgctgggacgtcgggcttaacaagaaa
accattgcctacttcaccctggcgaagactgacagtgatatgaagctgatgcatggagat
gagctaaggctgagatacgtgggcgagctgcacaagccctgggcgggcgtgggccacgtg
atcaaagtccctgataactatggggacgacgtcgggctcgaactgaaatccggagccggc
gcgccagcagactgcaccgccagcttcgtagtggacttcatatggaagagcaccagcttc
gaccggatgcaactggccctccgcaagttcgccgtagacgagtcctctgtgtccggctac
atctaccgccgtctgctcggccatgaagtcgatgaggtgttgttccgcgtgcacttaccc
aagcacttcagcgcgccgaatctgcccgacctcaatcgatcccaggtgtacgccgtaaag
cacgctcttcagcgccccctatcgctcatccaaggcccgcccggcaccggcaaaacggtc
acttcagccaccatcgtctaccaactcgtccggcagtccggcggccccgtgctagtgtgt
gcaccctctaatactgctgtcgatcaactgactgaaaaaattcatcgcactgggttgaag
gttgtgaggctgtgtgccaagtcgagagaagcgatggagtcttcggtatcatttttggcg
ttgcatgagcaggcgcgcgccctcggctcggcggacagcgagctccgcaagctgacgcgg
ctgaaggaggaggcgggcgagctgtccgccgccgacgagcgccgctaccgcgcgctgcgc
cgcgccgccgagcgccggctgctcgacgccgccgacgtcgtctgcaccacctgcgtcgga
gcaggtgacccccgcgtggcgcgcatgcgcttccagtccatcctgatcgacgagggcatg
caatccaccgagcccgagtgcatggtgcctgtcgtcctcggcgccaggcaactcatcctg
gtcggcgaccactgccagctcgggcccgtcgtcatgtgcaagaaggcagccaaagcaggt
ctctcccagtccctcttcgagcgcctcgtcgtcctcggcatccgacccttccgcctcgaa
gtacagtaccgcatgcatcccgaactatcacgattcccttccgatttcttctacgaagga
tcactccaaaacggagtcagcgcggaggagcggaggttacataagatagacttcccttgg
ccgagacccgatcgtcccatgttcttctacgtcacgcagggtcaagaagaaatcgccgga
tcgggtacctcttatctaaatcgtactgaggctgctaatgttgaaaagctgaccactcgc
tttttaaaagccggcgtgaggcctgaacagatcggtattatcactccctatgaaggacag
agatcgtacttagttcagcatatgcagtaccagggaagtttacacgctaaattgtatcaa
gaaattgaagtcgccagcgtcgacgctttccaaggtcgggaaaaggatattataatcatg
tcgtgcgtccgctccaatgaacatcaaggtataggtttcttgagcgacccgaggcgtcta
aacgtggctctaacgcgcgcgaagtacggattaatcgtcgtcgggaaccctaaggttctc
agcaagcagcccctatggaatcatttactggctttctacaaggagcgtcgagtgctgacc
gaggggccgctgtcgaatctgaaggagtcggcgattcagttcgcgaagccgaagaagctg
gtgaacgcgcagaatcccggttcgcacttcatgtcgacgtcgatgttcgacgcgcgcgaa
gcgatggtgccggggtctatttacgatagggctcgaccgctgcgggacccgctggcgtat
gtcggccccgagcgcgccgcgttgctgaacgcgcccgtgccgccggccgccttcaacatg
cgcggcccgcacacgcagcgcccgctccccggccacatggcgcgcggactgggcgcgcga
cgccggccgccgcggctgtcgcaggagccgctgtcgcagcaggcggcgctgtcgctgtcg
cagggcgcgtcgcagccggagttcagccaggagtcgctggcgcccgactgcccgtcgcag
ccggacgggctgctgtcgcaggactccacgtaccagggcgggttccggcgccagtactga
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