Leguminivora glycinivorella (soybean pod borer): 125234727
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Entry
125234727 CDS
T09956
Name
(RefSeq) general transcription factor IIH subunit 4
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
lgly
Leguminivora glycinivorella (soybean pod borer)
Pathway
lgly03022
Basal transcription factors
lgly03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lgly00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
125234727
09124 Replication and repair
03420 Nucleotide excision repair
125234727
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lgly03021
]
125234727
03400 DNA repair and recombination proteins [BR:
lgly03400
]
125234727
Transcription machinery [BR:
lgly03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
125234727
DNA repair and recombination proteins [BR:
lgly03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
125234727
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
125234727
NCBI-ProteinID:
XP_047997059
LinkDB
All DBs
Position
16:complement(20984432..21002596)
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AA seq
476 aa
AA seq
DB search
MSESSKSKSSLNLTPAPTLQCKDLHEYLKSRSAQFLETLYNYPTICLAVYRELPELARHF
VIRLLFVEQPVPQAVVASWVSQAHAKEQIKAAEALSELSVWQDAPIPGGLPGWMLAQSFK
KNLKVALLGGGRPWSMSMSLEPDGKARDVAFLDAYALERWECVLHYMVGSAQTEGISADA
VRILLHAGLMTRDAEDGSAVITRAGFQFLLLSTAKQVWLFLQHYLHTAEKRSLSAAECLA
FLYQLSFSTLGKDYSTEGMSNNMLVFLQHLREFGLVYQRKRKAGRFYPTRLALNIASVRG
DAEISQPADARGYIVVETNYRVYAYTQTSLQAALLGLFAELVYRFPNLVVGVLTRDSIRQ
ALRGGITAAQIIKYLEQHAHPQMLKADSGGIRCESVLPPTVVDQIKLWESERNRATYTEG
VVYNQFLSQADFAALRDYARGAKVLIWQSERTRTVVVTRAGHDDVRRYWKRYSKRE
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagtcttctaaatcaaagagttcattgaatctgacccctgcaccgacgttacag
tgtaaagatctgcacgaatatttgaaaagccggtcagcgcagtttctggagactttgtat
aactatcctacaatatgcctagccgtgtacagggaactgccggagctggcgcggcacttc
gtgatccgactgctgtttgtggagcagcccgtgccacaggctgttgtagcctcctgggtc
tcacaggcacatgctaaggagcagatcaaagcagcggaagccctatcagagctgtcagtg
tggcaggacgcgccaatccctggaggcctgcccggctggatgctggcacagtccttcaag
aagaacctcaaagttgctcttttaggaggcggtcgtccctggagcatgtccatgtctctg
gagcccgacggcaaggctcgcgacgtggcgtttttggacgcgtacgcgctggagcgctgg
gagtgcgtgctgcattacatggtggggtctgcgcagactgagggcatctctgctgatgct
gtgaggatcctactccacgctgggctcatgaccagagacgcagaagacggttcagcagtg
ataacccgcgctggtttccaattcctactcttgtcaacggccaagcaagtgtggctgttc
ctacaacactacctccacacagcagagaagagaagtttgtcggcagcagaatgtttggcg
tttctctatcagctcagcttcagtaccctgggcaaggattacagtacagagggcatgagt
aacaacatgcttgtgttcctgcagcatcttcgagagtttggcctcgtgtatcaaagaaag
cgcaaagccggccgcttctacccaactcgcctcgcgctgaacatcgccagcgtccgcggc
gacgccgagatatcgcagcccgccgacgctagggggtacatcgtcgtggaaaccaactat
agggtgtatgcgtacacacagactagtctacaggcggctttacttggactgttcgcagaa
ctagtctacaggttcccaaacttagtggtgggcgtgcttactcgagactcgatccggcaa
gcgcttcgcggcggcatcacggccgcgcagatcatcaaatacttggagcaacacgcacac
ccacagatgttaaaagcggactctggcggcatccgatgcgagtcagtgttgcctccaacg
gtcgtggatcagattaaactgtgggagagcgagcgcaaccgagccacctacacggagggc
gtcgtttataaccagttcctttcccaggcggacttcgcagcgctccgcgactacgcccgc
ggcgccaaggtgctgatctggcagtctgagcgcaccagaaccgtcgtagtgacgagagct
ggacacgacgacgttaggagatactggaaacgatactccaaacgagaataa
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