Leguminivora glycinivorella (soybean pod borer): 125235741
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Entry
125235741 CDS
T09956
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 6 isoform X1
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
lgly
Leguminivora glycinivorella (soybean pod borer)
Pathway
lgly03015
mRNA surveillance pathway
lgly03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
lgly00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125235741
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
125235741
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lgly03019
]
125235741
Messenger RNA biogenesis [BR:
lgly03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
125235741
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RSLD_CPSF6
RRM_1
RRM_11
Motif
Other DBs
NCBI-GeneID:
125235741
NCBI-ProteinID:
XP_047998272
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All DBs
Position
18:complement(8598442..8625624)
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AA seq
716 aa
AA seq
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MADGGVDIDLYADDIESDFNRQDEFGGENVDLYDDVISAPTSKPEDGDGPPNAPPSQHPP
EETNGNAPYHNNIPNQSHHRHPRAQLYVGNLTWWATDQDIANAVADVGVTDFQDVKFFEN
RSNGQSKGFCVISLGCEQSLRMVLERLPKKEIHGQHPVVTLPTKQALNQFESQSKTRSTP
PGPNNPGMRGPPHPGGPPGPHPGDFFGPGPNGPGPNGPRMMMPGGGHHQMRGPPPGPPHH
MQHQGPPPHHMQHQGPPPHQGPPPHRPPMQGPPPHHMQHDGQGPPHRPPMQFQGPPQMQR
PPGPRPGPGPGPGPEWAPRGPPHHMAPQPPQQYGPPQHQMPHQMPPPHQPGPGMPPHHMG
HGGPGPGGPGGPGPRAPLPHPGMNGYPGVGPGAPAPHVNPAFFNQQQPAPGPQPPPQQQP
PGPGAPYGHGPGPHAAQGPPPGARPQPYGRPPQSYPPSAEPARAPPHHAAPLAPHHAPLA
PAISEAEFEEVMSRNRTVSSSAIARAVSDAAAGEYASAIETLVTAISLIKQSKVAHDDRC
KILISSLQDTLHGVETKSYSSTERRRSRSREREARAHHRAPRRRERSASRYRDRSRDRED
RDRYRERSRERDRDRDAYYRDYRERERDRSRSRDRERADHYNRGHSREESTKTSSSLRPR
KSPVEAAAESGAGDASSGKRSGAAPYYDERYRERRERDPPPADRDRERDHRRDARH
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggaggcgtcgatatagatttgtacgctgacgatatagaatctgattttaat
agacaggatgagtttggaggtgaaaatgtggatctctacgacgacgtaatatctgcacca
acatcgaagcccgaggacggagatggaccaccgaatgcgccgccgtcgcagcatcctccg
gaggagaccaacggcaacgctccgtaccacaacaacataccaaaccagtctcatcatcgc
caccctcgggcacagctttacgtcggaaatctaacttggtgggcaacggaccaagatata
gcgaacgcggtcgctgatgtgggtgtgaccgatttccaagatgtcaagttcttcgaaaac
agatccaatggccagtccaaggggttctgtgtcatttctctgggctgtgagcagtccctc
aggatggttctggaacgtctgcccaagaaagaaattcacggacaacacccggttgtcact
ctgcctactaaacaggcgttgaaccagtttgaaagtcaatctaagacgaggtccactcca
cccgggccgaataaccccggcatgcgcgggcctccccacccaggcggtccgcccggaccg
caccccggagatttcttcggccccggtcccaatggccctggacccaacgggcctcgcatg
atgatgcccggcgggggtcaccaccagatgcgcgggcccccgcccggccctccccaccac
atgcagcaccagggcccgcccccgcaccacatgcaacaccagggcccgccgccgcaccag
ggcccgccgccgcatagaccaccgatgcaaggtccaccgcctcatcacatgcagcacgac
ggacagggaccgccgcacagacccccaatgcagttccaagggccgcctcagatgcagcgg
cccccaggcccccggccgggcccgggtcccgggccgggccccgagtgggccccgcgcggg
cccccgcaccacatggcgccgcagccgccgcagcagtacggcccgccgcagcaccagatg
ccgcatcagatgccacccccgcatcagccgggtccgggcatgccgccgcaccacatgggc
cacggcggaccagggccggggggccccggtggccccgggccgcgcgcgccgctgccgcac
ccaggtatgaacggttacccaggcgtgggcccgggcgcgccggcgccgcacgtgaacccg
gccttcttcaaccagcagcagcccgcgcccggcccgcagccgccgccgcagcagcagccg
ccaggtcccggcgcgccgtacgggcacgggcccgggccgcacgccgcgcagggcccgccg
cccggcgcgcgcccgcagccctacggccgcccgccgcagagctacccgccaagcgcggag
cctgcgcgcgcgccgccgcaccacgcggcgcccctcgcgccgcaccacgcgccgctggcg
cccgccatcagcgaggccgagttcgaggaggtcatgtcccgcaaccgcaccgtctcctcc
agcgccatcgctcgcgccgtgtccgacgccgccgccggggagtacgcctccgctatcgag
acgctcgtcactgctatatcgctcattaaacagagcaaggtggcccacgacgaccgctgc
aagatcctcatctcgtcgctccaagacacgcttcacggcgtggagaccaagtcctacagc
agcacggagcggcgccgctcccggtcccgcgagcgtgaggcgcgcgcgcaccaccgcgcg
ccgcgccgccgcgagcgctccgcctcccgctaccgcgaccgctcccgcgaccgcgaggac
cgagacaggtatagggaaaggtcgagggagagagatcgcgaccgtgatgcgtactacagg
gattaccgcgaacgcgagcgtgaccgctctcgctctcgcgatcgcgaacgcgctgaccac
tacaaccgcggacatagccgggaagaaagtactaaaacgagctcgtccctcaggcctcgc
aagtcgcccgttgaggcggcggcggagagcggcgcgggcgacgcgtcgagcggcaagcgc
agcggcgccgcgccctactacgacgagcgctaccgcgagcgtcgcgagcgcgacccgccg
cccgccgaccgcgaccgcgagcgcgaccatcgccgcgacgccaggcactag
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