Leguminivora glycinivorella (soybean pod borer): 125235807
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Entry
125235807 CDS
T09956
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
lgly
Leguminivora glycinivorella (soybean pod borer)
Pathway
lgly03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lgly00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125235807
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lgly03021
]
125235807
03019 Messenger RNA biogenesis [BR:
lgly03019
]
125235807
Transcription machinery [BR:
lgly03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
125235807
Messenger RNA biogenesis [BR:
lgly03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
125235807
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
Pcf11_helical
zf_PCFS4
Pcf11_C
Pfc11_Clp1_ID
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
125235807
NCBI-ProteinID:
XP_047998353
LinkDB
All DBs
Position
18:18486098..18512529
Genome browser
AA seq
1629 aa
AA seq
DB search
MSKEIADEYASSLSDLTVNSKPLINMLTILAEENIDHAGVIVETVEKHLEKVQADIKLPV
LYLVDSIIKNVGGAYVQKFSQIIVNMFTRTFKQVDEKVRSQMFKLRETWHDVFPATKLYQ
LDVKVNLIDPAWPIQAQPQQSTIHVNPNFLKKPAASATTSAPSAEEEEKMKMILAKKEQE
LLMLQRKKIEIELEKTRRALEIAAATNTKMPAIPPVVPNMPVALVNPVMAPVPEAPLVSV
KQRLGPPVNKAPSGARIAPVSAALASARRDPRLARRHHQPQPAPAVPVALHPHPHRSHCP
RPYTKRKNVITIDVRPDAARRDPRLDKRTERRDKQLRLEARRDDELRRRAAREARRERKH
EPKDEDKPEDKYPEMDIDKLQIADAKKISKLPPIPKIKRDNRDKDEKRERNAVRLEKKKK
RESGSSKESSASSSPEKKPKNKKEKKEKPEPEEPEVVAFKELKNYHPERYRPRARSPSAE
PAPAEPRDTNDAAESKDVDLRVLPTVQETKAAPVAVKRSSTELLEGKPKKNKIDKFDSGQ
RSLHQDSPHVSPKKDWNEVKEKEETKKTPSKLDLVRAKLAEATKGKDRLGRPFLFSKSPS
VEKERRRTISSEDVDLRLENSEEFDCEDHKKTISIIMNQAKEQFSDGKLDKNQYNTLMFQ
VLQLNEKLKLKEAKQRESLEISKRKLHAVENNKVPSPKSSPKGNNFGDIDERVIPGPFVE
PDGPPEMKFMQDSDMRMMDGPSPGLLPRPPMMPMFAGPGPQPAWRGPFRPRGDEFARRPR
GVVPPFFRGKFDKRAPRVPFESRLPFPAPQMQLPTPQMGLPGRVPAEPYERACTPPPLGA
PGVIIPPSNIQALEYVDRDPVKTIQIDGIPREIRFYGETAIIMMDWDDPREIKFLPGSRR
VTFDNKDSIVLNFNDDYKQVEIDDQVFDIRFGAPTRELFINGRWHECFFGGXAARVIIDG
KPRLIHLEGPLPQVDIGKLKRTDLVGGKINLIVDATQMCPVFLDAKVQKFSINNQFFTIR
FVDAFRTVLINEQPFQVEFGGLPRPISXNEKHFIRFSVLPRHVRPGHNPPPGMQARRRLK
WAPARVEKMETDPEPPRPNKTPSPENEMSNQGGLDMLASLMPSSMAPASASDYTSAEPLF
NRPHTIPGLETPTPTPTAEQKPAFPILGNIDDLFAKLVATGIIKSQEVKEETKEKEEPRV
EEKVKPREDKNVIHRVDLTRPETLRQKQPALVAKLYGGMQCSGCGARFPPEHTVRYSQHL
DWHFRQNRRERDSARRAHSRHWHYDLADWVQYEELEDLEEREKSWFETGGAEAGVEPPVA
EVEAPSVAAGAPARASCALCGDAFLQFYNEDQEEWHLRNSVRHEDNNYHPLCLEDYKASL
TKEEPPKEETPEEEKMEAAIEIRDVDETIDNSDNESVVEVVDNDKPVEIDDLDDTPEPAA
EAPKEEEAPEEVEDGDEDDVVFKAEPVPEVVVEDYDTDDETSAERLQRDEQAKIDYENIK
IKQEPVDPDDEPIITAEEQAIRAAPDTSRPGVLSSLDGNAELLAPAAPPPAPIRINISAP
IAKPAAASAAPAPARARSPPRADSDDEPPPPGEEPELAFTLKPALRAVALARQPPVVRGT
ELSGLCSIM
NT seq
4890 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaggaaatcgcggacgagtacgcgtcgagtctgtccgacctgactgtgaacagc
aagccgctgatcaacatgctgaccatcctggccgaggagaacatcgaccacgcgggggtt
atcgttgaaaccgtggagaagcacttggagaaggtccaagcggacatcaagctgcccgtg
ctctatttagtagattccatcatcaagaatgtgggcggcgcctacgtgcagaagttctct
cagatcattgttaacatgttcactaggactttcaaacaggtggatgagaaagtcagatca
caaatgttcaagctacgagaaacgtggcatgatgtgttcccagccacaaagctgtaccag
cttgatgttaaagtgaatctgatcgacccggcgtggccgatacaggcgcagccgcagcag
tcaaccatccatgtaaatcccaattttctgaaaaagcctgctgcttccgctaccacaagc
gccccctcagccgaggaggaggagaagatgaaaatgatcctcgccaagaaggagcaagag
ctgctcatgttgcagaggaagaagattgagattgagctagagaagacgaggcgggcgctg
gagattgcagccgctactaatactaagatgccagcgatccccccggtggtgccgaacatg
ccagtcgcgctcgtgaaccccgtcatggcgccggtacccgaggctccgctggtctctgtc
aagcagcgcttgggcccgcccgtgaacaaggcgccctccggcgcgcgcatcgcgcccgtc
agcgccgcgctcgcctccgcgcgccgcgacccgcgcctcgcgcgccgccaccaccaacca
caaccggcgcccgctgtgcccgttgcactgcacccgcacccgcaccggtcacactgcccg
cgcccatacaccaagcgcaagaacgtcatcaccatcgacgtgcgccccgacgccgcgcgc
cgcgacccccgcctcgacaaacggacggagaggcgggacaagcagctgcggctcgaggcg
cgccgcgacgacgagctccgccgccgcgccgcccgcgaggcgcgccgcgagcgcaaacat
gaacccaaggacgaagacaaacccgaagacaaatatccagagatggacatcgacaagctc
cagatcgccgacgcgaaaaagatcagcaaactccccccgatccccaaaatcaaacgggac
aacagggacaaggacgagaagcgggagagaaacgcggtgcgcctcgagaaaaagaaaaag
cgcgagagcggaagcagcaaggagagctcggcgagctcctcgcccgagaaaaaacctaaa
aacaagaaggagaagaaggagaagccggaaccggaggagccggaggtggtcgcgttcaag
gagctcaagaactaccaccccgagcggtaccgtccgcgcgcgcgctcgcccagcgccgag
cccgcgcccgcagagccccgcgacacaaatgacgcagccgagagcaaggacgttgacctg
cgcgtgttgccgacggtacaggaaaccaaggcggcccccgtggcggttaagcgatcgtcc
acggaactgctagagggaaagcctaagaagaacaagattgataagtttgacagcggacag
cggagtcttcaccaagattccccccacgtctcccccaaaaaagactggaatgaggttaaa
gagaaggaggagaccaagaaaactccttcgaaactggatctggtcagggcgaagctggca
gaagctacgaagggaaaagatagattgggaagaccgttcctgttcagcaaatcaccaagt
gtagaaaaagagaggcggcgaacaatcagctcagaagacgtagacttaagacttgaaaac
tcagaggaattcgactgcgaagaccacaagaaaaccatctccatcatcatgaaccaagcc
aaagaacagttcagcgacggcaaactagacaagaatcagtacaacacactcatgttccaa
gttctacagctcaatgagaagctcaagcttaaggaagcgaaacagagggaatcccttgag
atttccaaaagaaaattacacgccgtagaaaacaataaagtcccaagtccaaaatcgtca
ccgaaagggaataacttcggggatatcgatgagagggtaataccgggtcctttcgtcgag
ccggacggaccgccagaaatgaagttcatgcaagattccgacatgaggatgatggacgga
ccctcaccagggctgctcccgcgcccgcccatgatgccgatgttcgccggccccggcccg
cagcccgcgtggcgtggacccttccggccccgaggggacgagttcgcgaggaggcccaga
ggcgtcgtcccgcccttcttcagaggaaaattcgataagcgagcgcctcgagtacccttc
gagtcgcgcctacctttccccgcgccgcagatgcaactccccacccctcaaatgggcctt
ccagggcgagtgcccgctgaaccttacgagcgagcctgcaccccaccgccgctcggcgct
cccggcgtcatcatcccgccgtccaatatacaagctttggaatacgtcgaccgagatccg
gtgaagactatccaaatcgatggaatccctcgagagatcaggttctatggagagaccgct
attatcatgatggattgggatgacccacgagaaattaaattccttcctggaagcagacga
gtcacgttcgacaataaagattctatagtcctaaacttcaacgacgattacaaacaagtt
gagatcgatgatcaagtgtttgacatcagatttggagctccgacgagagaactattcata
aacggaagatggcacgagtgtttcttcggcggcngcgccgctcgggtcataatcgacgga
aaacccagactcatccacctcgaaggcccgctacctcaagtagatataggaaaactaaag
cgcactgatctcgtaggcgggaagataaacttaatagtggacgctacgcagatgtgcccc
gtattcttagacgctaaagtgcaaaagttcagtattaacaaccaattctttactatacgg
tttgtcgacgcgttcagaacggtgttaatcaatgagcagccgttccaagtggagtttggc
gggttgccgcggcctatttcatagaacgagaagcatttcatcaggttctcggtgctgccg
cgccacgtgcggccgggacacaacccgccgcccggcatgcaggctcggaggcggctgaag
tgggcgccggcgagggtggagaagatggagacggatccggaaccgccgaggcccaataag
acgcccagtcccgagaatgaaatgtctaaccaaggcggcctcgacatgctagccagcctc
atgccgtcgagcatggcgcccgcctcggcctccgactacacctccgccgagccgctcttc
aaccgcccccacaccatccccggcctggagacacccacccccacccccaccgctgaacag
aagcccgccttccccatacttggcaacattgacgacctgttcgccaagttggtagccacg
gggatcataaagtcgcaggaggttaaagaggagacgaaggagaaggaagaaccgcgggtg
gaggagaaagttaagccgagggaggataagaatgttattcatagagtggatttgaccagg
ccggagactttgagacaaaaacaaccagccctcgtagcgaaactgtacggcggcatgcag
tgcagcggctgcggcgctcgcttcccgcccgagcacaccgtccgctactcgcagcatctc
gactggcacttcaggcagaacaggagagagagagactcagccaggagggcacattcaagg
cactggcattatgaccttgctgactgggtgcagtatgaggaacttgaggatttggaggag
agagaaaagagttggttcgagacgggtggcgccgaggccggcgtcgaacccccggtggcc
gaagtggaagcgccgtctgtcgcggccggggcgccggcgcgggcgtcgtgtgctctctgc
ggggacgccttcttacagttctacaacgaggaccaggaggagtggcatctcaggaactcg
gtgcgccacgaggacaacaactaccacccgctgtgcctcgaggattacaaggcgtcactc
acaaaggaagagccgcccaaagaggaaactcctgaggaggaaaagatggaggcagccatc
gagatcagggacgtcgacgagaccatagacaactcggacaacgagtccgtcgtcgaggtt
gtcgacaacgacaaacctgtcgagatcgatgacctggacgacactccggagcccgcggcc
gaggcgcccaaagaggaagaagcgcccgaggaggtcgaagatggagacgaggacgacgtg
gtcttcaaggcggagccagtaccagaagtggtggtggaagattacgacaccgacgatgag
acgagcgcggagcggctgcagcgcgacgagcaggccaagatcgactacgagaacatcaag
atcaagcaggaacctgtcgatccggatgacgagccaataataacagccgaggagcaggcc
atccgcgccgcgcccgacacgtcgcggcccggcgtgctgtcgtcgctggacggcaacgcc
gagctcctcgcgcccgccgcaccaccacccgcgcccatcaggatcaacattagcgctccc
atagccaagccggcagcggccagcgccgcgcccgcgcccgcgcgcgcgcgctcccctccg
cgcgcggacagcgacgacgagccgccgccgccgggcgaggagccggagctggccttcacg
ctcaagcccgcgctccgggccgtcgcgctcgcccgccaaccccccgtcgtgcggggaacc
gagctctccggcctctgctccatcatgtga
DBGET
integrated database retrieval system
