Leguminivora glycinivorella (soybean pod borer): 125236400
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Entry
125236400 CDS
T09956
Name
(RefSeq) ATP-dependent RNA helicase WM6
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
lgly
Leguminivora glycinivorella (soybean pod borer)
Pathway
lgly03013
Nucleocytoplasmic transport
lgly03015
mRNA surveillance pathway
lgly03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lgly00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125236400
09122 Translation
03013 Nucleocytoplasmic transport
125236400
03015 mRNA surveillance pathway
125236400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lgly03019
]
125236400
03041 Spliceosome [BR:
lgly03041
]
125236400
Enzymes [BR:
lgly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125236400
Messenger RNA biogenesis [BR:
lgly03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
125236400
Spliceosome [BR:
lgly03041
]
Complex C
Other components
EJC/TREX
125236400
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
125236400
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
125236400
NCBI-ProteinID:
XP_047999146
LinkDB
All DBs
Position
19:complement(16964241..16965850)
Genome browser
AA seq
425 aa
AA seq
DB search
MADNDDLLDYEDEEQAEQQTADGATEAAPKKEVKGSYVSIHSSGFRDFLLKPEILRAIVD
CGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQIEPSENHVYVLVMCHT
RELAFQISKEYERFSKYMAGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRILALVNS
KKLNLKHLKHFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKF
MQDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVQRCIA
LAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNY
DMPEDSDTYLHRVARAGRFGTKGLAITMVSDEGDAKILNEVQDRFDVNITELPEEIELST
YIEGR
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atggctgacaatgacgatcttttggactacgaagacgaggagcaggcagagcagcaaacc
gccgacggagcgacagaagcggcgccaaagaaagaggttaagggatcctacgtatctatt
cacagttccggattcagagattttctgttaaaacccgaaatattgcgagctatagtcgac
tgcggtttcgagcatccgtcagaagtgcagcatgagtgtattccgcaagccgtactcggt
atggatattctttgccaagcaaagtctggtatgggtaagacagctgtgtttgtcttagcg
acgcttcaacagatcgagccgtcggaaaaccatgtgtacgtgcttgttatgtgccacact
cgcgagctcgcgttccaaatcagcaaagagtacgagcgtttctctaaatatatggctggc
gtgcgagtgtctgtgttcttcggtggtatgccgatccaaaaggacgaggaagtgctgaag
accgcctgcccgcacatcgtcgtcggcacgccgggcagaatcctggcgctagtcaacagc
aagaagcttaacctgaagcacttgaaacacttcatcctggatgaatgcgacaaaatgtta
gagtcacttgacatgagaagagatgtccaggagatctttaggaatacaccccatggaaaa
caagtgatgatgttctccgctacattgagcaaggaaatcaggccggtttgcaagaagttc
atgcaagatcctatggaggtttatgtagatgacgaagctaagctgacattgcatggtctg
cagcagcactatgttaaactaaaggagaatgagaagaacaagaaactgtttgaactgctg
gatgtactggaatttaaccaagtagtgatatttgtgaagtctgtgcagcgctgcatagct
ctagctcaattactgaccgaccagaacttccctgctattggaatccatcgcaacatgacc
caggacgagcgtctttcccgctaccaacaattcaaggacttccagaagagaatccttgta
gcaacaaatctgtttggacgaggtatggatattgagcgagtcaatattgtcttcaattat
gacatgcctgaggactctgacacatacttgcatcgtgtggcgcgcgccggccgatttggt
accaaaggcctggctatcaccatggtgtctgatgaaggtgatgctaagatcctgaatgaa
gtccaagaccgctttgatgtcaacattaccgagctacccgaagagattgagttatctacc
tacattgagggacgatag
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