Leguminivora glycinivorella (soybean pod borer): 125241575
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Entry
125241575 CDS
T09956
Name
(RefSeq) replication factor C subunit 4
KO
K10755
replication factor C subunit 2/4
Organism
lgly
Leguminivora glycinivorella (soybean pod borer)
Pathway
lgly03030
DNA replication
lgly03410
Base excision repair
lgly03420
Nucleotide excision repair
lgly03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lgly00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
125241575
03410 Base excision repair
125241575
03420 Nucleotide excision repair
125241575
03430 Mismatch repair
125241575
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lgly03032
]
125241575
03036 Chromosome and associated proteins [BR:
lgly03036
]
125241575
03400 DNA repair and recombination proteins [BR:
lgly03400
]
125241575
DNA replication proteins [BR:
lgly03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
125241575
DNA Replication Termination Factors
ELG1-RFC complex
125241575
Chromosome and associated proteins [BR:
lgly03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
125241575
DNA repair and recombination proteins [BR:
lgly03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
125241575
Check point factors
HRAD17(Rad24)-RFC complex
125241575
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
DNA_pol3_delta2
Rep_fac_C
RCF1-5-like_lid
AAA_16
AAA_30
AAA_22
Gp44_lid
AAA_24
Mg_chelatase
RuvB_N
AAA_11
Rad17
bpMoxR
SLFN-g3_helicase
AAA_3
AAA_19
AAA_5
AAA_assoc_2
DUF815
Effector_1
Viral_helicase1
DUF3373
Motif
Other DBs
NCBI-GeneID:
125241575
NCBI-ProteinID:
XP_048006079
LinkDB
All DBs
Position
Z:20177244..20188704
Genome browser
AA seq
350 aa
AA seq
DB search
MQAFLKTGKISASAKPSPSGTKPTKKKPPAPWVEKYRPKTIDDIVDQGEVVQVLRECLSG
GDLPHLLFYGPPGTGKTSAILAAARQLFGDISRDRVLELNASDERGIQVIRDKVKSFAQL
TVSSTRPDGRPCPPYKLVILDEADSMTTAAQAALRRTMERETRTTRFCLICNYVSRIIPP
ITSRCSKFRFKPLARENVIMRLREICESEGVEIGDGSVLEQAVGTCEGDLRRALTALQCC
QRLLGEVTAEGLVEVTGLVPEKLVNEYLAIKNYGELEQFVENFLMEAYSASQLLEQASAA
VVSGGHLTNRQKVRISEKLAGCAHRLQDGGAEAMQLTDLGCAIIMANNDP
NT seq
1053 nt
NT seq
+upstream
nt +downstream
nt
atgcaggcctttcttaaaactggaaaaatatcagcctcagctaagccgtcgccgtccggc
accaagccgacaaagaaaaaaccgccggcaccatgggtcgaaaaataccgcccaaaaact
atcgacgacatcgtagatcagggagaggtggttcaagtgttgagagaatgtctgtcgggc
ggtgatctgccgcacctgttgttctacgggccgccgggcacgggcaagacgagcgctatc
ctggcagcggcgcggcagctgttcggcgacatctcgcgcgaccgcgtgctggagctaaac
gcgtccgacgagcgcggcatacaggtcatccgggacaaagtcaagtcgtttgcacagctc
acagtcagcagcactagaccagatgggcggccctgtcctccttacaagctggtgatactg
gacgaggcggactccatgacgacagcggcgcaggcggcgctgcggcgcaccatggagcgc
gagacgcgcaccacgcgcttctgcctcatctgcaactacgtgtccaggatcatcccgcct
atcaccagccgctgctccaagttccgattcaagccgctggcaagagaaaatgttatcatg
aggctgcgagagatctgcgagtcggagggcgtggagattggcgacgggtcggtgctggag
caggctgtgggcacgtgcgagggcgacctgcggcgcgcgctcaccgcgctgcagtgctgc
cagcggctgctgggagaggtcacggctgaagggctcgtggaggtgactggtttggtgccg
gagaaacttgtcaacgagtacctggctatcaagaactatggggaactggaacagtttgtt
gagaatttcctaatggaagcgtactcggcgtcgcagttgctagagcaggcgtcggcggcg
gtggtgagcggcgggcacctcaccaaccggcagaaggtgcgcatcagcgagaagctggcc
ggctgcgcgcaccgcctgcaggacggcggcgccgaggccatgcagctcacggacctgggc
tgcgccatcatcatggccaacaacgacccttga
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