Latilactobacillus graminis: LG542_00595
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Entry
LG542_00595 CDS
T06857
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lgm
Latilactobacillus graminis
Pathway
lgm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lgm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LG542_00595 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lgm03019
]
LG542_00595 (recQ)
03400 DNA repair and recombination proteins [BR:
lgm03400
]
LG542_00595 (recQ)
Enzymes [BR:
lgm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LG542_00595 (recQ)
Messenger RNA biogenesis [BR:
lgm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LG542_00595 (recQ)
DNA repair and recombination proteins [BR:
lgm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LG542_00595 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
ParM_N
DUF6305
DDE_Tnp_1_6
Motif
Other DBs
NCBI-ProteinID:
QFP78835
LinkDB
All DBs
Position
125235..126986
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AA seq
583 aa
AA seq
DB search
MQAQGVLKEKFGYDHFREGQLEVIESLLAGTNVLAIMPTGGGKSLCYQIPALMLSGLTLV
ISPLISLMKDQVDALNENGIPATFINSTLTQSAVQERFNQAARGEVKLLYVSPERLDSDY
FLTDLAELTIDLIAVDEAHCISQWGHDFRPSYLRLTDTIQKMRQQPTIVALTATATSQVA
DDIMQRLKIQHEVKTGFSRENLAFQVVKNQNSDRYLIDYLKVNKQKSGIIYASTRKEVER
LTKLIEKAKLDVTMYHGGLNETIRRQNQEDFLYDRKPIMVATNAFGMGIDKSNVRFVVHA
QIPGSLEAYYQEAGRAGRDGLPSEAILLFKVNDVQIQHFFIDQSEMDDIHKQQEYAKLQE
MTQYANTQQCLQQYIVNYFDDDCEACGRCSNCLDTREEQDITIDVQKVLSCVKRMDERFG
KVLVAQVLTGSKNQKIMQFRFDELPTYGLMRGDSQKEVSGLIDYLVASGYLQASGGQYPV
LQITTTGVAVLKGQAKVTRKMAVKVQQTLPEDNELFEQLRALRRDLAENQGVPPFVIFSD
KTLYSMCEMMPTSLTEMLDVKGVGENKLEKYGEQFLDILMTER
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atgcaagcacaaggtgtattaaaagaaaaatttggctatgatcattttagagaaggccaa
ttggaggttattgaatcactgttagcggggactaacgttttagcaattatgccaactggt
ggcgggaagtcgctatgttatcagattccagcattgatgctatctggcttaacgctggtg
atatcgcctttgatttctttgatgaaagatcaagtcgatgcgcttaatgaaaatggaatt
ccggccacgtttatcaatagtacattgactcaaagtgcagtccaagaacgctttaatcag
gccgcacgcggcgaagtgaaattactctatgtttcaccggagcgcttagattcagattat
tttttgaccgatttggcggaattaacaattgatttgattgcggtcgatgaagcgcactgt
atatcgcaatgggggcacgattttcggccgagttatctacggttaaccgatacgattcaa
aaaatgcggcaacagccaacgattgtggcattaactgcgactgctacctcacaggttgca
gatgatattatgcaacgcttgaaaatccaacatgaggttaaaaccggtttttcacgggaa
aatcttgcgttccaagtagttaaaaatcaaaatagtgatcgctacttaatcgactattta
aaggtcaacaaacaaaaatctgggattatttacgccagcacgcggaaagaagttgaacgg
ctcacaaagctgattgaaaaggccaagttggatgtgacgatgtatcatggtggtctgaac
gaaacaatacgccgccagaatcaagaagattttctttatgatcgcaaaccgataatggtc
gcgactaatgcgtttggcatgggcatcgataaaagtaatgtgcgttttgtggtccatgct
cagattcctgggagtttagaggcttactatcaagaagctggccgggccggtcgtgatggc
ttgccaagtgaagccattctattgtttaaagtgaatgatgtgcagattcaacatttcttt
attgatcagtcagaaatggacgacatccataagcaacaggaatatgccaagttacaggaa
atgacgcaatatgctaatacgcaacaatgtttgcaacagtacatcgttaattattttgat
gatgattgtgaagcgtgcggccgttgtagtaactgtctggatacgcgtgaagaacaagac
atcacgattgatgtacaaaaagtcttatcgtgtgttaaacggatggacgaacgatttggg
aaggtgctggtggctcaagtgttgacgggctccaagaatcaaaaaatcatgcaatttcga
tttgatgaattaccgacctatggtttaatgcggggggattcgcaaaaggaagtcagtggt
ttgatcgattatttagtggcatctggttatttacaagcttcaggtggccaatatccagtg
ctccaaatcacgacaacgggggttgcggtcttgaagggtcaggctaaagtaacccgtaaa
atggcagttaaagtgcaacagacgttgccagaagacaatgaattgtttgagcaactacgt
gcgttacggcgtgatttagctgaaaatcaaggcgtaccaccatttgtaattttttcggat
aagaccctatattcaatgtgtgaaatgatgcccacttcgctgactgaaatgttagatgtc
aaaggtgtgggagaaaacaaacttgaaaaatacggcgaacaatttttggatatcttaatg
acagaacggtga
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