Latilactobacillus graminis: LG542_05410
Help
Entry
LG542_05410 CDS
T06857
Name
(GenBank) excinuclease ABC subunit UvrA
KO
K03701
excinuclease ABC subunit A
Organism
lgm
Latilactobacillus graminis
Pathway
lgm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lgm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LG542_05410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lgm03400
]
LG542_05410
DNA repair and recombination proteins [BR:
lgm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LG542_05410
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LG542_05410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
SMC_N
AAA_21
UvrA_DNA-bind
nSTAND1
DnaJ_CXXCXGXG
AAA_29
AAA_15
AAA_23
RsgA_GTPase
AAA_16
DUF4350
nSTAND3
Anti-TRAP
cobW
Phage_min_cap2
AAA_25
NACHT
YobI-ATPase
AAA_28
Hydantoinase_B
RNA12
DUF463
Cytidylate_kin
Motif
Other DBs
NCBI-ProteinID:
QFP79710
LinkDB
All DBs
Position
complement(1098443..1100983)
Genome browser
AA seq
846 aa
AA seq
DB search
MIVKQPTKIEVRGGNVNNLKNINVDIPLNQFVAISGPSGSGKSSLAMGILYAEGSRRYLE
ALSTYTRRRISQNKRSQVQEVRHIPSAIALRQRPSMPSERSTVGSMSEIFNVVRLIFSRL
GTTRCPNGHVVQPSLQIAQAMDLAGDKMGMITCPTCQVQFMAKSAEDFAFNSGGACPECH
GTGQIQTLDDRKIIADENLSIEDGAIASWRLPGRNFMPTVAAHLGVRIDIPYKDLTAKEK
ATVLHGKRGKYAVDFHTSTGRVFSTENTLYENAYDAVYASLKSVKSDRAMTKVNSFFHFS
TCPTCHGTRLNPQLLTQLVGGQNIAEVADLTLGALADWMTVTKAGLPEEMQQMATILFKN
LSETLQPLLELGLDYLTLARNGNTLSTGELQRIQLARTLRTATTGVLYVLDEPSIGLHPD
NVEGLIHIFRQLVAQGNSLVVVDHEVNIISQADWVIEIGPEAGRKGGQIIAQGKPADLMQ
NPQSLIGPYIAGRANILYPKVSSQTSMHATTLTVDNYFNLHDVTIQVPDNQITAISGFSG
AGKTSLILDSLVPAIEAKHQHQSLPQQVSQLTTDLTAVVSIDAKPVGKNTRSTLATYTSI
MTNLRKLFARLPESQAHNYGIAHFSYNNKEGACPNCGGLGSIILDIQYLPDMEEICPECH
GKRYKPEIQAIKWHGYSIVDCLDLSVEEALPVFAEVPNILKELKTLKEIGLAYLHLGEST
PSLSGGEAQRLKLATHLNKKRNGTLFVFDEPSIGLHPRDVETLMGVINQLKAKGATIIMI
THDLDLMTNADYLIDLGPKGGSQGGQLMAMGNPFELVTTNQQSLTLNYLRAHFKKYNLLA
TKGTVK
NT seq
2541 nt
NT seq
+upstream
nt +downstream
nt
atgatagtcaaacaaccaacaaaaattgaagtacgtggtggaaacgtcaataatttaaaa
aatattaacgttgatattccactaaaccaatttgtcgcgatatcaggtccctcaggatca
ggaaaaagttcgttagcaatgggaattttatatgccgaaggatcacgccgttatttagaa
gcattgtcgacgtatactcggcgtcgaattagtcagaataaacgttcacaagtacaagaa
gtgcggcatattccatcagcaatcgcgctccgacagcgaccaagtatgccgtcggaacgt
tcaacagttggttcaatgagtgagattttcaatgttgttcggttaattttttcaaggttg
ggtacaactcgctgtcccaatgggcatgttgttcaaccaagcttacagattgcccaggcg
atggatttagctggtgataaaatggggatgattacctgtccgacatgccaagtgcaattc
atggctaaatcagccgaagatttcgcctttaattcgggcggtgcctgtccagagtgtcat
ggaacaggccagattcaaaccttagatgaccgtaaaattattgcggatgaaaacctcagt
atcgaagatggtgcgattgcgtcttggcgcttaccaggacgtaactttatgccaacggta
gcagcacacctcggggttcggatcgatataccatacaaagatttaacggccaaggaaaaa
gcaaccgtcttacatggcaagcgtggcaaatatgctgttgattttcacacctcaacgggg
cgggtttttagtacagaaaacacactttacgaaaatgcttatgacgcagtttatgcgtcg
ttaaaatcggtaaaaagtgatcgggcgatgactaaggtcaattccttttttcacttttca
acctgtccgacatgtcatgggacgcgattaaatccacaattgttaacccaattggtcggt
ggtcaaaatatcgcggaggttgctgatttaacattgggggctttagcagattggatgaca
gttactaaagctggtttaccagaagaaatgcaacaaatggcgacgattctctttaaaaat
ttatcagaaacactacaacctctattagaactaggattagattatttaacgctagcccgt
aatgggaatacgttatcaactggagagttgcagcggattcaattagcaagaacgttgcgg
accgcaacaaccggggtattatatgtgttagatgaaccgtcgattggattacatccggat
aacgttgaaggtttaatccatatttttcgccaattagtagcacaaggtaattcattagtg
gttgtggatcatgaagtcaatatcatcagccaggctgattgggtaattgagattggacca
gaagccggccgtaaaggcggtcaaattattgcacagggtaaaccagctgatttaatgcag
aatccgcagtcgctaattggaccatatattgcaggtcgcgctaatattttgtatcccaag
gtatcgtcgcaaactagtatgcatgctacaaccttgacggtcgataactattttaattta
catgatgtgacgattcaggtgccagataatcaaatcaccgcaatttcaggtttttcaggt
gccggtaaaacaagtttgatcttagatagcttagtgcctgcaattgaagctaagcatcaa
catcagtctttgccgcaacaagtctcacaattgacgacggatctaaccgcagttgtcagt
attgatgccaaaccagtcgggaaaaatacgcgttcaactttagcaacctataccagtatc
atgactaacctacgcaaattgtttgcgcgtttaccggagtcacaagcacataattacggg
attgcacatttttcctataacaataaagaaggggcttgtcccaattgtggtgggctaggt
agcattatcttggatattcaatatttacccgacatggaagaaatttgtccagaatgtcat
ggtaagcgttataaaccggaaattcaagcaatcaagtggcatggctatagcatcgttgat
tgcttagatttgtccgttgaagaagcattacctgtatttgcagaggtccctaatattttg
aaagaactcaaaactctcaaggaaattgggttagcttatctccatctcggtgagagtacc
ccgagtttatcaggtggtgaagcacaacgtttaaaattagccacacacttaaataaaaaa
cgcaatggaacgttgtttgtgttcgatgaaccatcgattggcttacacccacgggatgtc
gagacattgatgggcgtgattaatcaattaaaggctaagggggccacgattatcatgatt
acccacgatcttgatctgatgacaaacgccgattatctgattgatttaggcccgaaaggc
ggtagccaaggtggacaattaatggcaatgggaaatccatttgagctggtgactactaat
cagcagagtttaaccttgaattacttacgtgcgcattttaaaaagtacaatctattagcg
accaaggggacggtgaaatga
DBGET
integrated database retrieval system
