Latilactobacillus graminis: LG542_06790
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Entry
LG542_06790 CDS
T06857
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
lgm
Latilactobacillus graminis
Pathway
lgm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lgm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LG542_06790 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lgm03019
]
LG542_06790 (rny)
Messenger RNA biogenesis [BR:
lgm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LG542_06790 (rny)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_PNO1_2nd
KH_KhpA-B
KH_NusA_2nd
KH_2
Colicin_V
Motif
Other DBs
NCBI-ProteinID:
QFP79970
UniProt:
A0ABX6C8M4
LinkDB
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Position
complement(1386142..1387704)
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AA seq
520 aa
AA seq
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MNLAFPLILAVIMLIVGLLVGSVLQKKAHEREIDGANKTATGIIAAAEKEAATRKKEILL
EARDENHRYRSEIEDELKDRRSEVQKQENRLIQREETMDRKDATLDKKERSLEQRENHLT
NEAQALSEKQVVADNLVEQQRAKLQEIAELSHDEAQKIILDETKQSLEHERAVLIKESEE
SAKEHADRTARTLVAEAIQRSAADMVAETTVTVVTLPNDDMKGRIIGREGRNIRTLETLT
GIDLIIDDTPEAVVLSGFDPIRREIARMTLEKLIQDGRIHPARIEEMVDKSRKEMDEQIR
QIGEQAIFDVGVHTMHPDLIKTIGRLHFRTSYGQNVLNHSIEVAKLAGILAAELGEDVTL
AKRAGLLHDIGKALDHEVDGSHVEIGVELATRYKEPATVVNAIGSHHGDTEATSIISVLV
AAADAISAARPGARSESLENYIHRLEKLESITNSFKGVDHSFAIQAGREVRVIVKPEQVT
DDQATVLARDVKNQIENQLEYPGHIKVTVIRETRTVEYAK
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atgaacttagcttttccattaatcctcgcagtcatcatgttaatcgttggtttactagtt
ggttccgttctacaaaagaaggcgcacgaacgtgaaattgatggtgcaaataagactgcc
acaggaataatcgcagcagctgaaaaagaagccgcaacgcggaagaaagaaattctcttg
gaagcaagagatgaaaatcaccgctatcgctctgaaattgaagatgaattgaaagatcga
cgcagtgaggtacaaaagcaagagaatcggttgattcaaagagaagaaacaatggatcgt
aaagatgcaacgttggataaaaaagaacgttcattggagcaacgcgagaatcatttaaca
aacgaagcgcaagcacttagtgaaaagcaggttgtcgctgataatttggttgagcaacaa
agagcgaaattgcaagaaattgctgagttatcgcatgatgaagcgcaaaaaatcatttta
gatgaaacaaaacaaagtctcgagcacgaacgagctgttttgatcaaagaaagtgaagaa
tcagctaaagaacatgccgaccggactgcacggacattagttgccgaggccattcaacgg
agtgcagcagacatggttgctgaaaccacagtgacggtcgttaccttgccaaatgatgat
atgaaggggcggattatcggtcgtgagggccgtaatattcggactttggagacgttgacc
gggattgatctgattattgatgatacgccagaagcagttgtattaagtggctttgatccg
attcgtcgtgaaattgcgcgcatgacgttagaaaagttgattcaagatggccggattcat
ccagctcggattgaagaaatggttgacaagtcacgaaaggaaatggacgaacagattcga
cagattggtgaacaagcaatctttgatgttggtgtgcatacgatgcatcctgatttaatc
aagacaattggccgcttacacttcagaaccagttatggtcaaaatgtcttgaaccattca
attgaagtggcgaaattagcgggcattttagcggctgaattaggtgaagatgtgacactc
gctaaacgagctggcttgctacatgacatcggtaaggccctcgaccatgaggttgatggc
tctcacgttgaaattggcgtggaactggcaacgcgttataaggaaccggcgacggttgtc
aatgcgattggttcacatcacggcgacactgaagcaacatcgattatttcagtcttagtc
gcagcagccgatgcaatttctgcagcacgcccgggggcccgttctgaatcactcgaaaat
tacattcatcgtcttgaaaaacttgaaagtattacgaatagttttaaaggcgttgatcat
agttttgcgattcaggctggtcgtgaggtgcgggtgattgttaaacctgaacaagttaca
gatgaccaagcaacagttttagcgcgcgatgtaaaaaatcaaattgaaaatcaactcgag
tatcctggccatattaaggtgactgtgattcgtgaaacaagaacggttgaatacgcgaag
taa
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