Latilactobacillus graminis: LG542_07420
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Entry
LG542_07420 CDS
T06857
Name
(GenBank) DEAD/DEAH box helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
lgm
Latilactobacillus graminis
Brite
KEGG Orthology (KO) [BR:
lgm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lgm03019
]
LG542_07420
03009 Ribosome biogenesis [BR:
lgm03009
]
LG542_07420
Enzymes [BR:
lgm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LG542_07420
Messenger RNA biogenesis [BR:
lgm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LG542_07420
Ribosome biogenesis [BR:
lgm03009
]
Prokaryotic type
rRNA helicases
LG542_07420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QFP80051
LinkDB
All DBs
Position
complement(1491872..1493227)
Genome browser
AA seq
451 aa
AA seq
DB search
MDNQFTQFNLKPEIIAALDDMHFTKPTAVQRRVIPAINAGKSVIGQSQTGSGKTHAFLLP
LLNKLVPEKDAVQIVITAPSRELAYQIYTADELITQHMDAKLRIGRYVGGTDKQRQIEKL
AQHQPQIVIGTPGRILDLIKSKALKIYTAQYLVIDEADMTLDMGFLKPVDEIASRLPEDL
QMMVFSATIPDKLQPFLQKYMHNPVIEEVKNETVISPTIDNWLVPTKGKALNQTIYSLLT
MGHPFMVLIFANTKSKVDDIHRYLQAQGLKVAKIHGDIPPRQRKRIMKEIHNLDYQYVVA
TDLAARGIDIEGISMVINAEIPREDLEFFIHRVGRTGRNGLAGTAITLYGPDDEAAVAQI
EAMGIKFTPKTFKDGELVTSYDRNRRKKRVATTRELDVGMKGMVKKAKLKRKPGYKKKIK
AAIKQDAQKKRRVEQRVEMRERKRQNKKQNS
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atggataatcaatttacacaatttaatctaaaaccagagatcatcgcggctttagacgac
atgcactttacaaaaccaacggcggttcaacggcgggtaattccagccattaatgctggt
aaaagtgtgattggccaatcacagactggtagcgggaaaacccatgcgttcttattaccg
cttttaaataaattagtgccggaaaaagatgccgtccaaattgtgattacagcgcctagc
cgagaattagcttaccaaatttatacggcggatgaattaatcacgcaacatatggatgcg
aagctacgcattgggcgctacgttggtggaactgacaagcaacgacaaattgaaaaactc
gcacaacatcagccgcaaatcgtgattggaacaccgggacgaattttagatttaatcaag
agcaaagcgctcaaaatctatacggcacagtatttagtaattgatgaagcggatatgacg
cttgatatgggctttttgaagccagtcgatgaaattgctagtcgtttacctgaagattta
caaatgatggtcttttcggccacgattccagataagttacagccctttttacaaaaatac
atgcacaatcctgtaattgaagaagttaaaaacgaaacggtgattagccccaccatcgat
aattggttagttccaaccaaaggtaaagcccttaatcaaacaatttattcgttgttaact
atggggcatcctttcatggtgttgatatttgctaatactaagagcaaggtagatgacatt
catcgttacttacaggcgcaaggcttgaaagtcgctaagatccatggcgatattccacca
cgtcaacggaaacggattatgaaagaaatccataatttggattatcaatacgttgtggcg
actgacttagcggctcgcggaattgatattgaagggattagcatggtgattaatgccgaa
attccacgcgaagatttagaattctttattcatcgggttggccggactggccggaacggc
ttagcagggactgcgattaccctttatggaccagatgatgaagcagctgtggctcagatt
gaagcaatgggtattaagtttaccccgaagacgtttaaagatggtgaattagtgacctca
tatgaccggaaccgacgtaaaaagcgagtggcaactactcgtgaattagatgttgggatg
aaaggcatggttaaaaaagctaagctaaaacggaaaccgggctataagaaaaagattaaa
gcggcaattaaacaagatgcgcaaaagaaacgccgtgttgaacaacgcgttgaaatgcgt
gaacgtaaacgccaaaataagaaacaaaatagttag
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