Companilactobacillus ginsenosidimutans: ABM34_05495
Help
Entry
ABM34_05495 CDS
T03990
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lgn
Companilactobacillus ginsenosidimutans
Pathway
lgn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lgn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ABM34_05495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lgn03021
]
ABM34_05495
03400 DNA repair and recombination proteins [BR:
lgn03400
]
ABM34_05495
Enzymes [BR:
lgn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ABM34_05495
Transcription machinery [BR:
lgn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ABM34_05495
DNA repair and recombination proteins [BR:
lgn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ABM34_05495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
BSH_YknX
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AKP67048
UniProt:
A0A0H4QK56
LinkDB
All DBs
Position
complement(1016366..1020043)
Genome browser
AA seq
1225 aa
AA seq
DB search
MIDVNKFESMQIGLASPDKIRSWSYGEVKKPETINYRTLKPEKDGLFDERIFGPTKDWEC
ACGKYKRIRYKGIVCDRCGVEVTRSKVRRERMAHIELAAPVTHIWYFKGIPSRMGLVLDM
SPRNLEEVIYFASYVVIDPGEGTDLETKQLLTESEYRKKREEFGNKFVAKMGAEGIRELL
SQVDMAAEVKDLREVLHTAQGQKRTRAIRRLDILSAFQKSGNKPEWMVMDAIPVIPPDLR
PMVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPNIIVQNEKRMLQEAVDALIDNG
RRGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIDVGPTLKFYQCGLPR
EMALELFKPFVMHELVKREIASNVKNARRKIDRQDDDIWDVLEDVIKERPVLLNRAPTLH
RLGIQAFEPVLVDGKSIRLHPLACEAYNADFDGDQMAVHVPLSDEAQAEARMLMLAAHHI
LAPKDGKPIVTPSQDVVLGNYYLTIETRHMAGEGKIFKDLNEIKIALLNGDVHYHTRIGI
SVESMPKKPFKEDQRNKIMITSVGKAIFNEILPEDFPYLNEPTDDNLINGVPDKYFLGKG
ENIEDRLDEMELIDPLKSGYLSDIIAQIFKVYRVQRTSELLDDMKELGYTICTYSGLTVG
VTDVPNLTEKPQIIDKAHKQVASISKQFRRGLITDEERHDRVISVWNETKDDIQQRLIDS
FDPTNPINLMSDSGARGNISNFTQLAGMRGLMAAPNGGMMEIPVISNFREGLSVLEMFMS
THGARKGMTDTALKTANSGYLTRRLVDVAQDVIVREEDCGTDRGLEVSSIVEGTDMIEPL
YDRLVGRYTQKTVKDPATGDVIVPRGVMMDEDMAQKIVDAGVETVTIRSAFTCNTKHGVC
KKCYGRNLATGEEVEIGEAVGTVAAQSIGEPGTQLTMRNFHTGGVAGGDDITQGLPRVQE
IVEARNPKGLAIISEVDGTITAIDENPAEHTKEITVEGNIDNRTYSVPYTSSVAVAEGDV
ITRGSKLTQGSIDPKELIKITNVQTTENYLLAEVQKVYRMQGVDISDKHFEVMIRQMLRK
VRVLDPGDTDVLPGELMDISQFTDHNRDTLIKGGIPATGRPVLLGITKASLETNSFLSAA
SFQETTRVLTDASIRGKNDPLLGLKENVIIGKLIPAGTGMAKYNHMEPKKTGPMAANSLN
GAYTISDIEEQMKAEDAKKQEERNK
NT seq
3678 nt
NT seq
+upstream
nt +downstream
nt
ttgatagacgttaataaattcgaaagtatgcaaattggtttggcttctccagataagatc
cgtagttggtcttatggtgaagttaagaaacccgaaacaatcaactaccgtactttgaaa
ccagaaaaagatggtctattcgatgaaagaatttttggaccaactaaagactgggaatgt
gcctgtggtaagtacaaacgtatccgttataagggtattgtttgtgatcgctgtggtgtt
gaagttacacgttcaaaagttcgtcgtgaacgcatggctcatatcgaattagcagctcca
gttacacatatctggtacttcaagggaattccatcacgtatgggactcgttttggacatg
agcccaagaaaccttgaagaagttatttactttgcttcatacgtagttattgatccaggt
gaaggtacagacctagaaacaaaacaactacttacagaatctgaataccgtaagaagcga
gaagaatttggtaacaagtttgttgctaaaatgggtgctgaaggtattagagaattgctc
agccaagttgatatggctgcagaagttaaagacttacgtgaagttctacatactgcacaa
ggtcaaaaacgtacacgtgctatcagacgtttggatattttaagtgctttccaaaaatct
ggtaacaaaccagaatggatggtaatggatgctattcccgttatcccacctgatttacga
ccaatggttcaacttgaaggtggacgttttgccacatctgacttgaacgatttataccgt
cgtgtaattaaccgtaacaaccgtttgaagagattgttggacttaaatgctcctaacatc
atcgttcaaaatgaaaagagaatgttgcaagaggctgttgatgccttgatcgataatggt
cgtcgtggccgtccagttactggaccaggtaacagaccattgaagtcactttcacatatg
cttaaaggtaagcaaggacgtttccgtcaaaacttacttggtaaacgtgttgactactca
ggtcgttcagttatcgatgttggtcctacattgaagttctatcaatgtggacttcctcgt
gaaatggctttggaattattcaagcctttcgtaatgcatgaattagttaaacgtgagatt
gcatcaaacgttaaaaatgctagaagaaaaattgatcgtcaagatgacgacatttgggat
gttcttgaagatgtaattaaagaacgtccagtattacttaaccgtgcacctacacttcac
agacttggtatccaagcctttgaacctgtattggttgatggtaagtcaattcgtcttcac
ccacttgcttgtgaagcttataatgccgattttgatggtgatcagatggctgtccatgtg
ccactatcagacgaagctcaagctgaagcacgtatgttgatgctagctgctcaccatatt
cttgctcctaaagatggtaaacctatcgttacaccatcacaggatgttgttttgggtaac
tactacttaacaattgaaacaagacatatggctggtgaaggtaagatctttaaggatctt
aacgaaattaaaattgctttgttaaatggtgatgttcattaccatacaagaattggtatt
tctgttgaatcaatgccaaagaaacctttcaaagaagatcaacgtaacaagattatgatt
accagtgttggtaaggcaatctttaacgaaattcttccagaagatttcccatacttaaac
gaacctactgatgacaaccttatcaatggtgttcccgataagtacttcttaggtaagggt
gaaaacattgaagaccgtttggacgaaatggaacttatcgatccacttaagagtggttat
ttaagtgatatcatcgctcaaatcttcaaagtttaccgtgttcaaagaacatcagaactg
cttgatgatatgaaggaattaggttacacaatctgtacttattctggattaactgttggt
gttactgatgttcctaatttaactgaaaaaccacaaatcatcgataaggcccacaaacaa
gttgcttcaatttctaagcaattccgtcgtggtttgattactgatgaagaacgacacgat
cgtgttattagtgtttggaacgaaactaaggatgatattcaacaaagattgattgattcc
ttcgatccaacaaatcctattaacttgatgtctgactctggtgcccgtggtaatatctca
aactttacacagcttgcaggtatgcgtggacttatggctgctcctaatggtggtatgatg
gaaatccctgttatttctaacttccgtgaaggcctatctgttttggaaatgttcatgtca
actcacggtgcccgtaaaggtatgactgatactgcgttgaagacagctaactcaggttac
ttgactcgtcgtctagttgatgttgcacaagatgttattgtccgtgaagaagattgtggt
actgatcgtggtctagaagtcagctcaattgttgaaggtacagacatgatcgaaccattg
tatgaccgtctagttggtcgttatactcaaaagacagttaaagatcctgctacaggtgac
gtaattgttcctcgtggtgtaatgatggatgaggatatggctcaaaagattgttgacgct
ggtgttgaaacagttacaattcgttcagcatttacatgtaacacaaaacatggtgtatgt
aagaagtgttacggtcgtaaccttgctactggtgaagaagttgaaattggtgaagcagtt
ggtactgttgctgctcaatcaatcggtgaacccggtacacaactaacaatgcgtaacttc
catactggtggtgttgctggtggtgacgatattacacaaggacttcctcgtgttcaagaa
atcgttgaagctagaaaccccaaaggtcttgcaattatttctgaggttgatggtactatt
acagcaatcgacgaaaaccctgcagaacatacaaaggaaattactgttgaaggtaatatc
gataacagaacttacagtgttccttatacatcaagtgttgccgttgccgaaggtgacgtc
attacacgtggtagtaagttaacacaaggttcaatcgatcctaaggaattaatcaagatt
acaaacgttcaaacaacagaaaactatctacttgctgaagttcaaaaagtttaccgtatg
caaggtgttgatatttctgataagcatttcgaggttatgatcagacaaatgcttcgtaaa
gtacgtgttcttgatccaggtgatacagatgtattaccaggtgaattaatggatatttca
caattcacagatcacaaccgtgatactttgattaaaggtggaattccagcaacaggtcgt
cctgtattgcttggtattactaaagcctcacttgaaacaaacagtttcttgtcagctgca
tcattccaggaaacaacaagagttcttactgacgcttcaattcgtggtaagaatgatcca
cttcttggacttaaagagaatgttattattggtaaacttattcctgccggtactggtatg
gctaagtataaccacatggaacctaagaaaactggtcctatggctgcaaactctttaaat
ggggcttacacaatttctgacatcgaagagcaaatgaaagctgaagatgccaaaaaacaa
gaggaacgtaataagtaa
DBGET
integrated database retrieval system
