Companilactobacillus ginsenosidimutans: ABM34_05590
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Entry
ABM34_05590 CDS
T03990
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lgn
Companilactobacillus ginsenosidimutans
Pathway
lgn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lgn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ABM34_05590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lgn03400
]
ABM34_05590
Enzymes [BR:
lgn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ABM34_05590
DNA repair and recombination proteins [BR:
lgn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ABM34_05590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
UB2H
RecG_dom3_C
AAA_22
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AKP67060
UniProt:
A0A0H4R037
LinkDB
All DBs
Position
complement(1039320..1042850)
Genome browser
AA seq
1176 aa
AA seq
DB search
MNFNKYISNKLNLGEFIENVKPDTKNALTGLTGSTISLFALETLTKTNKKILMVENTNFH
ANKLYDDLNLLNSEQVHIFPVEEAISTEIATSSPDELSQRIDALSFLIDDKPGILVTSTS
GIEYALSAKELFKESQLKIEKNEEYNLEQLNSIFVQMGYSKEKLVAKPGDFAIRGDIVDI
YPLNVDDPIRIEFFGDQVDKIKSFDTETQRSINELTEINILPAKDRVVTEEQAQAGLEKL
RKSYDKQISTDDKDVKSNLEVTFGQTIEALSEGMRPDNLGSVIDYLIEKPSNLLDYLSSD
DFVFFDEYNRLVEQSNDNGTDNQDWLTSQLEYGKALPEQKIRQSFVDIVKENHNPQVYLS
TLQQGMGRMKLNQLKNVPVRSMQQFFSQMPLLKSEVERWQKQKYTVMILISNEKRIQAIN
NTLQDFGIKASLTTTDKILPERTQIMNATLSLGFEIPDEHVAVITEKELFNKQPKRRRHQ
TLANAERLKSYSELKPGDYVVHVNHGIGKFIGMKTMEVDGKHQDYITIEYRDDGRLFIPV
TQLDMVQKYVSSEGKSPRVNKLGGKEWAKTKNKVQSSIEDIADDLIDLYAKREAEKGFPF
PKDDQMQHDFDDAFPYPETPDQLRSIDEIKRDMEKAHPMDRLLVGDVGFGKTEVALRAAF
KAVEGNKQVVLLAPTTLLAQQHYETMRERFEGFPVNIAVLSRFQSRKQSKEIIEKLETGE
VDIVVGTHRLLSKDVKFHDIGLLIIDEEQRFGVKHKEKIKELKANVDVLTLTATPIPRTL
NMSMLGVRDLSLIETAPSNRYPVQTYVMEQNFDVVAQAIKREMERGGQVFYLHNRVEDME
RTADQIQALVPEARIATAHGRMNETQMEGVISDYLEGDYDVLVTTTIIETGVDMPNTNTL
IVENADRYGLSQLYQIRGRVGRSSRVAYAYLMYRPNKVLTEVGEQRLEAIKNFTELGSGF
KIAMRDLSIRGAGNLLGKQQHGFIDSVGFDLYSQMLNDAVARKRGHTRAEKTNSEINLEL
DAYLPADYITDERQKVELYKRIRQIDSVENYQEVRSELIDRFGKYPIEVSNLLDVSLLKA
NFDEALVKKVMMKNGMIAVTFAKKAADYLTGDLVFKFLENTTMKATVRNSDEAFVITLDS
GSVGKDEWFSQLQIFAEKMAIKFNELKKQKAKDKKK
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
gtgaattttaataaatacatttccaataagctcaatcttggggaatttatagagaacgtc
aaacccgatacgaagaatgcgttgacaggtttaacaggctcgacgatttccctttttgca
ttggaaactttaacaaaaacaaacaaaaagattttaatggttgaaaatactaattttcat
gccaacaaactttatgatgacttaaacttattaaatagcgagcaagttcatatttttcct
gttgaagaagcaatttcaactgagattgcaactagttctcctgatgaattgagtcaacga
atcgatgcactcagtttcttaatagatgacaaaccaggaatcttagtaacttcgacttct
ggtattgaatatgctttatcagcgaaggaattatttaaggaatcgcaactcaaaattgaa
aaaaatgaagaatataacttggaacagttaaattccatttttgtccaaatgggttatagc
aaagaaaaattagttgctaagccgggagattttgctattcgtggtgatattgtcgatatt
tatccgctcaatgttgacgatccaattagaattgaattttttggtgaccaagttgataaa
attaaatcatttgatactgagactcaacgtagtattaatgaattaactgagataaacatt
ttgcctgcaaaggaccgtgtggttacagaagaacaagctcaagctgggttggaaaagctt
cgtaagagttatgataagcaaatttcgactgatgataaagatgttaaaagtaatctggaa
gtaacttttggacagacgattgaggctttgtctgaaggaatgcgtccggataatttgggt
agcgttattgattatttgatcgaaaaacctagtaatttacttgattatttgagctcagat
gattttgtgttttttgatgaatacaatcgcttggttgaacaatctaacgacaatggaact
gacaatcaggactggctaactagtcaattggaatatgggaaagctttgccggaacaaaag
attcgtcaaagttttgtcgatattgtcaaagaaaatcataatccacaagtatatttgtcg
acgcttcaacaaggtatgggacggatgaaacttaatcaattgaagaatgttccagtccgt
tcgatgcaacaatttttcagccaaatgccgttactcaaatctgaggttgaaagatggcag
aagcagaaatatactgtcatgattttgattagtaatgaaaaacgtatccaggcaatcaat
aatacgttacaagattttggtatcaaagcttccttaactactactgacaaaatcttgccg
gaacgtacgcaaattatgaatgcaactttatcattgggatttgaaataccagatgaacac
gttgcagtcattactgaaaaagaattattcaacaaacagcctaaacgtcgtcgccaccaa
actttggccaatgcggaacgtctcaagagttactcagaattaaaacctggagactatgta
gttcacgtcaatcatggtattggtaaatttatcggcatgaagactatggaggttgatggc
aagcatcaagattatattacgattgaatatcgtgatgacggtcgtttgtttattccagtt
actcaactggatatggttcaaaaatatgtttcttctgaaggtaaatcaccacgagtcaat
aaacttggtggtaaagagtgggccaagactaaaaataaagttcaatcaagtattgaagat
attgctgatgacttgatcgatttatatgccaaacgtgaagctgaaaagggatttcctttt
cctaaggatgatcagatgcaacatgattttgacgatgcttttccttacccagaaacacca
gatcagttgcggtcaattgatgagattaaacgtgatatggaaaaagcccatccaatggat
cgacttttggttggggatgttggctttggtaaaacagaagttgctttacgtgctgctttt
aaagctgtcgaaggaaacaaacaagtagttttactagcaccaactacacttttggcacaa
caacattacgaaactatgcgtgaaagatttgaaggattccctgtgaatatcgcggtactt
tctcgtttccagagtcgtaagcaaagtaaagaaataattgaaaaactcgaaactggtgaa
gttgacatcgttgtgggaacacatcgacttttgtcaaaagatgttaagttccacgatatt
ggattgttgattatcgatgaggaacagcgtttcggagttaaacataaggaaaaaattaag
gaattaaaggcaaatgttgatgttctaacattaacagctacaccaattcctagaacttta
aacatgtcgatgctcggtgttcgtgatttatcactgattgaaaccgcccctagcaaccgt
tatccggttcaaacttatgttatggagcaaaattttgatgtggtcgctcaagctatcaag
cgagaaatggagcgtggtggacaagtcttttatctccacaatcgtgtggaagatatggaa
cgaactgccgaccaaattcaagcgttggttcctgaagcaagaattgccacggctcacggt
cgtatgaacgagacccaaatggaaggggttatttctgattacctcgaaggtgactacgac
gttctggttacaacaacaatcattgaaactggtgttgatatgccaaataccaacacgtta
attgttgagaatgctgaccgatatggtttgtcacagttgtatcaaattcgtggacgtgtt
ggacgttcaagccgagtggcctacgcatatttgatgtatcgtcccaataaagttttgaca
gaagtcggcgagcaacgtcttgaagcaatcaagaatttcaccgaattaggttcaggattc
aagattgctatgcgagatttatcgattcgtggtgcaggtaacttattaggaaaacaacaa
cacggattcattgattcagtcggattcgacttgtattctcaaatgctaaatgatgccgta
gcaagaaaacgtggccatacacgtgccgagaaaactaactctgaaattaatttggaatta
gatgcatacttgccagcagactacattaccgacgagcgtcaaaaagttgagctttacaag
cgaattagacaaattgattcggtcgaaaattatcaagaagttcgttcagaattaattgat
cgattcggtaagtatcctattgaagtatctaatttactcgatgttagtttattgaaagct
aacttcgatgaagcactcgtcaaaaaagttatgatgaaaaatggtatgattgctgttaca
tttgccaagaaagcggcagattacttaacaggagatttagttttcaaattcctagaaaac
accactatgaaagctactgttagaaattccgatgaggcgtttgtaataacgttggattca
ggtagtgttggcaaggatgaatggtttagccaattacaaatttttgctgagaaaatggca
attaaatttaatgagcttaaaaaacagaaagctaaagataagaaaaaatga
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