Companilactobacillus ginsenosidimutans: ABM34_05635
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Entry
ABM34_05635 CDS
T03990
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lgn
Companilactobacillus ginsenosidimutans
Pathway
lgn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lgn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABM34_05635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lgn03019
]
ABM34_05635
03009 Ribosome biogenesis [BR:
lgn03009
]
ABM34_05635
Enzymes [BR:
lgn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ABM34_05635
Messenger RNA biogenesis [BR:
lgn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ABM34_05635
Ribosome biogenesis [BR:
lgn03009
]
Prokaryotic type
rRNA helicases
ABM34_05635
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
Helicase_RecD
CobA_CobO_BtuR
Mdv1
Motif
Other DBs
NCBI-ProteinID:
AKP67068
UniProt:
A0A0H4QK64
LinkDB
All DBs
Position
complement(1051168..1052715)
Genome browser
AA seq
515 aa
AA seq
DB search
MKFSELKLDSKLLAAVDEAGFEETTPIQAQTIPLVMTGDDVIGQAQTGTGKTAAFGLPIL
DAVDTNSSDIQALIISPTRELAIQTQEELFKLGRNKKVRVQSVYGGSDIRRQINALKNHP
SVVVGTPGRIKDHISRHTLKLHNVKTVVLDEADEMLDMGFVEDIESILSNVPHDHQTLLF
SATMPKPIMKIADKFMTKPEIVKIKSKELTADNIDQYFVKAKDFEKFDLMTRIFDVQAPE
LALIFGRTKRRVDELTRGLQARGYNAEGIHGDLSQDKRTSVLRKFKAGKLDFLVATDVAA
RGLDISGVSHVYNYDIPQDPDSYVHRIGRTGRAGKSGVSVTFVTPNEMSYLRTIENLTKK
RMTPLAPPTDNEVLKGQMEGVKEDIKDTLAHDKNLDRFKDATEELLNEYTPEQLVMVYLS
SAIKDAESVPVKIAPERPLPGRKQSHNRSGHGNGKRRFSHGRRSGERNEHRGGRRDDRRG
GNGGHSRGGNNSNHRRNDSKKPTQSKKAFKIRTNL
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
gtgaaatttagtgaattaaaattagattcaaaattattagctgctgtcgatgaggccgga
ttcgaagaaacaacgcctatccaagcacaaactattccacttgtaatgacaggtgatgac
gtgattgggcaagcccaaacaggtacaggtaaaactgctgcttttggacttccaatttta
gatgctgtagatactaattctagtgatattcaagcattgattatttccccaacacgtgaa
cttgcaattcaaacacaagaagaattgttcaagttaggacgcaacaaaaaagttagagtt
caatcagtttatggtggttctgatattagaagacaaattaatgccttgaaaaaccatcct
agtgttgttgtgggtactccaggacgtattaaagaccacatcagccgtcacacacttaag
ttacacaacgttaagactgttgttcttgatgaagctgatgaaatgttagacatgggattc
gttgaagatatcgaaagtatcttgtcaaacgttcctcatgatcaccaaacattattattc
tcagctacaatgcctaagcctatcatgaagattgctgataagtttatgacaaaacctgaa
atcgttaaaattaagtcaaaggaattaacagctgataacattgaccaatactttgttaaa
gccaaagatttcgaaaaatttgatttaatgacacgtattttcgatgttcaagcaccagaa
ttggccttgattttcggacgtacaaaacgtcgtgttgatgaattaacacgtggattacaa
gctcgtggctacaatgcagaaggtattcacggtgacttatcacaagataagagaactagc
gttttacgtaagttcaaagctggaaaacttgatttcttagttgcaactgatgttgctgcc
agaggtttggatatttctggtgtatctcacgtttataactacgatattcctcaagaccca
gacagttatgttcaccgtattggacgtacaggtcgtgccggtaagtctggtgtgtcagta
acattcgttacacctaacgaaatgagttacttacgtacaatcgaaaacctaactaagaaa
cgtatgacaccattagcaccaccaactgacaacgaagtattaaaaggtcaaatggaaggt
gttaaggaagatatcaaagataccttggcacacgataagaatctagatcgtttcaaggat
gcaactgaagagttgttaaatgaatatactcctgaacaattagtaatggtttacttgagt
tcagcaatcaaggatgctgaaagtgttcctgttaagattgctccagaacgtccattacca
ggtcgcaagcaaagtcataaccgttcaggtcatggcaatggcaaacgtcgtttcagtcat
ggtcgtcgtagcggtgaaagaaatgaacaccgtggtggcagacgtgatgatcgtcgaggc
ggaaatggtggtcacagtcgtggtggtaataacagtaaccacagacgtaatgacagcaag
aaaccaacacaatcaaagaaagcattcaagattagaacaaatctttaa
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