Companilactobacillus ginsenosidimutans: ABM34_12355
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Entry
ABM34_12355 CDS
T03990
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
lgn
Companilactobacillus ginsenosidimutans
Pathway
lgn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lgn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABM34_12355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lgn03019
]
ABM34_12355
03016 Transfer RNA biogenesis [BR:
lgn03016
]
ABM34_12355
Enzymes [BR:
lgn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ABM34_12355
Messenger RNA biogenesis [BR:
lgn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ABM34_12355
Transfer RNA biogenesis [BR:
lgn03016
]
Prokaryotic type
tRNA degradation factors
ABM34_12355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
RNase_II_C_S1
GRP
DUF421
Motif
Other DBs
NCBI-ProteinID:
AKP68250
UniProt:
A0A0H4R398
LinkDB
All DBs
Position
2488766..2491099
Genome browser
AA seq
777 aa
AA seq
DB search
MPDKENKLISDILEFFRSNPDRRYTSEQVEDVLRMHGSSAFKRVVKALAVLEGEGKITLT
NKDEFKMTQQTQVLEGVFKANEKGFGFVRYDEVDPDAFITRDHTLHAVNGDTVEIQITKP
SNPWDDKGPEAKITKIIERSIDKIVGEFHPYSDAQVKKTGHFGYVQSHEKRLASYMIFIS
DKGLHPQMGDMVQVSIEEYPSDEHPASMEGTALEIIGNKNDPGVDIISIVLDNDINPEFP
KDVLQAAEKIPDHVTEADRAGRKDLTKDTVITIDGDDSKDFDDAVEVEKLSSGNFHLAVH
IADVTHYVTEGSAIDEEAYARGTSTYLVDRVIPMLPFRLSNGICSLNPGEDRLALTCDME
ITGQGEVINYDIFPSVIQSKYRMTYNNVNEILKGDAELTAEYADLVPMLTDMAELHKILF
NKRHERGAIDFEETEAQIIVDENGKPIDIKLRNRGVSERMIESFMLAANETVAKNYNLKH
VPFLYRVHEKPDEEKVKNFFEFAAAIGVDVHGNLKDINPKMFQSVLSEVTDTPEEAVVTI
MLLRSMQQARYSDEALGHFGLAAKYYTHFTSPIRRYPDLIVHRMIHSYAENGFTDKEKEK
WGGKLQPIAEHTSSRERKSIDAERAVDDLKKTEYMADKVGEEFDAVVSSVTSFGMFIQLD
NTVEGLIHISNMKDDYYEYDEKSMSMHGRSTGKIFKVGQPIKVKLIRADAEQRKIDFERV
LSPEEAEKAKQREEEFKKRRASHSRSTFRGKGGNGSRGGGHGRSNDNNKKHGKYESR
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atgcctgataaagaaaataaattaatttcagatattctggaatttttcagaagcaatccg
gatagacgatacacttctgagcaagttgaagatgtgttaagaatgcatggctcatctgcc
tttaaacgtgttgttaaagctttggctgtccttgaaggtgagggtaaaattacgcttact
aacaaagacgagttcaagatgactcaacaaactcaagtattagagggtgtctttaaggct
aatgaaaaaggatttggcttcgttagatatgacgaagttgatcctgacgctttcattact
agagaccatactttgcatgccgtaaatggcgatactgttgagattcaaattaccaagcct
tcaaatccttgggatgacaagggtccagaagcaaagattaccaaaattattgaacgttca
attgataaaattgttggtgaattccatccatatagtgacgctcaagttaaaaagacgggt
cactttggatatgttcaaagtcatgaaaagcgtttagcttcatacatgattttcatttct
gataagggacttcacccacaaatgggtgatatggtccaagtttcaattgaggaatatcca
tctgacgaacatccagcaagtatggaaggtacagctctagaaatcattggtaataaaaat
gatcctggtgttgatattatttctattgtcttggataacgatattaatcctgaatttccc
aaggacgtactacaagctgctgaaaagattcctgatcatgttactgaagccgaccgtgct
ggacgtaaagacttgacaaaggacacagttatcacaatcgatggggatgactcaaaagat
ttcgatgatgccgtggaagttgaaaaactttccagtggcaacttccatcttgccgttcac
atcgccgatgttactcactatgtcactgaaggttcagctattgatgaggaagcttatgct
cgtggaacaagtacttatttagttgaccgtgttattccaatgttgccattcagactttcc
aacggaatttgttcattgaatcccggtgaagacagattggcacttacttgtgatatggaa
atcactggtcaaggcgaagttatcaactacgatatcttcccaagtgttattcaatctaag
taccgtatgacttacaacaatgttaacgaaatcctcaaaggtgacgccgaactcacagca
gaatatgctgacctagttccaatgctcacagatatggccgagttgcacaaaattttattc
aacaaacgtcatgaacgtggcgcaattgactttgaagaaactgaagctcaaatcattgtt
gacgagaatggtaagcctatcgatattaaactcagaaaccgtggcgtttctgaaagaatg
attgaatcattcatgttggctgccaatgaaacggttgctaagaactataacctgaagcat
gtcccattcttgtaccgtgtccacgaaaagccagacgaagaaaaggttaagaacttcttc
gaattcgctgctgctattggcgtggatgtccacggtaacttgaaagatatcaatcctaag
atgttccaaagcgttctatcagaagtaactgatactcctgaagaagctgttgttacaatt
atgttgttgagaagtatgcaacaagctagatattctgacgaagccctaggtcactttggt
ttagctgctaaatactacactcactttacttcacctatcagacgttatcctgacttgatc
gttcacagaatgatccacagttatgctgaaaatggctttactgataaggaaaaagagaag
tggggcggcaaacttcaaccaattgctgaacatacatctagtcgtgaacgtaaatcaatc
gacgccgaacgtgctgttgatgatttgaagaagactgaatatatggctgacaaagttggc
gaagagtttgatgctgtcgttagttcagtaactagcttcggtatgttcattcaattggat
aatactgttgaaggtctaattcatatctcaaatatgaaggatgattattacgaatacgac
gagaagagcatgtcaatgcacggtcgtagtactggtaagattttcaaagttggtcaacca
atcaaagttaagttgatcagagctgacgccgaacaacgtaagatcgattttgagcgtgtt
ctttcacccgaagaagccgaaaaagctaagcagcgtgaagaagagttcaagaagcgtcgt
gccagccactcacgtagcactttccgtggtaaaggtggaaatggtagccgtggtggcgga
catggccgttcaaatgataacaacaagaaacatggtaaatacgaaagcaggtga
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