Pseudoleptotrichia goodfellowii: JCM16774_0278
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Entry
JCM16774_0278 CDS
T06508
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
lgo
Pseudoleptotrichia goodfellowii
Pathway
lgo03410
Base excision repair
lgo03430
Mismatch repair
lgo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lgo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
JCM16774_0278
03430 Mismatch repair
JCM16774_0278
03440 Homologous recombination
JCM16774_0278
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lgo03400
]
JCM16774_0278
DNA repair and recombination proteins [BR:
lgo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
JCM16774_0278
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
JCM16774_0278
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JCM16774_0278
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Toprim
Motif
Other DBs
NCBI-ProteinID:
BBM35371
UniProt:
A0A510JAE9
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All DBs
Position
305954..308638
Genome browser
AA seq
894 aa
AA seq
DB search
MRNTKWVIKSVPKDKEIKINDIPVDKDILKILSSRGIKSAKDIKNFLNPKLENIQSPYGL
YDMEKTVKAIEKAVNKQKNIWIYGDYDVDGITSTSILYMALKELGAENVNYYIPVRDEGY
GLNNDALKKIKDSGGELVITVDCGITAFTEVEYANSLGLSMIITDHHNLHGNKIPKALTV
INPKRSENDFSFSSLAGVGTIFMVILALFERKGIKEKAYKYLDLVAIGTVADIVPLLEEN
RIFTKFGLEKLPFSENKGLNFLLYKLFNNDKGSVNDPKVEYSTYDVGFIIAPVFNAAGRL
KDAKMVVKLLISDNDREIDIIVKELINKNYERKELQNNIVEKVEKNIEKQHINEDFVIID
YSPEYHHGVIGIAAAKIVDTYYKPVIIMEVKEDEGIAVGSCRSIENFNILEALQSMPELF
VKFGGHSGAAGFTIPIKNIELFRKKINDYAKKILKEEDFVKVINIDKQIPIQKISYEFFQ
VIELLKPFGFGNPSPTFQTKNILLENIKFIGESKNHLMFDLKQKGFSNRNTVWFGAGEYF
KELSQNVVYDIVYKMKVESFQDRYYTKVYIDDIKVSDLKDDTLSYYHSLYNTSFPLKSVF
YTNIDLEKDSPLTVKIEFDQISLFQGRKFVGRLDYNVSNLLILLNEYYNQNFKIKIENIR
KTGNHNIVDILIKRDYNFECYDYTETSIFRKIKEFLIGNMEYDSYTKKLLSIFFKQNKNL
MIKTGKSSQNILNNFLLTTGIYYMKQTGKKSKIIIKNGKNTPYDNPFIKTYFDIMPKYKS
DGDCPFVFFCDEQAKFEKYIGENNSGTRFCCVSNVDFEKDFAGKSEQLSDVEIIENVEEL
PENIVLLSSLKKSELKDLKNIFVEYLPLKEKIRLKKLFQDGETIYSDEAVREIL
NT seq
2685 nt
NT seq
+upstream
nt +downstream
nt
atgagaaataccaaatgggttataaaaagtgtgcccaaagataaagagattaaaataaat
gacattcctgtggataaagatattttgaaaatcctgtcttcaagaggaataaaatccgcc
aaagatataaaaaattttctcaatccgaaactggaaaatattcagtctccttacggactt
tatgatatggaaaaaacagtgaaagcgattgaaaaagcggtaaataaacaaaaaaatatc
tggatatatggtgattatgatgtagacggtattacttccacgtcaattttgtatatggct
ttaaaagagttgggagcagaaaatgtgaattattatattcctgttcgtgatgaaggatac
gggcttaataatgatgctttgaaaaaaataaaagattccggaggagagcttgtcatcact
gtagattgcggtattactgcttttaccgaagttgagtatgcaaattctctcggactttca
atgattataaccgatcatcataatttacacggaaataaaataccgaaagctcttacagtt
ataaatcctaaaagaagtgaaaatgacttttcttttagttcgttagccggagtcggaaca
atattcatggttattcttgcactttttgaaagaaaaggaataaaagaaaaggcatataaa
tatcttgatcttgtagccataggaacggtagccgatattgtacctttacttgaagaaaac
agaatatttacgaaattcggattggaaaaactgcctttttcggaaaataaaggattaaat
tttctgttatacaagttattcaacaatgacaaaggttcggttaatgatccgaaagttgaa
tattctacttatgatgtgggatttattatcgctccggtatttaatgcagcaggtcgtctg
aaagatgccaaaatggtagtaaaacttttgatttccgacaatgacagagaaatagacatt
atagtaaaagagcttattaataaaaattatgagagaaaagaattacaaaacaatattgtg
gaaaaagttgaaaaaaatatagaaaaacagcatataaatgaagattttgtaattatagac
tattctcccgaatatcatcacggagttatagggattgctgcggctaaaatagtcgatact
tactataaaccggtaattattatggaagtaaaagaagacgagggaatagctgtgggatcg
tgcagaagtatcgagaatttcaatattttggaagcacttcagtctatgcccgaattattt
gtaaaattcggagggcattcgggagctgcaggttttacgattcctattaagaatattgaa
ctgttcagaaaaaaaatcaatgactatgcaaagaaaatattaaaagaagaagattttgtg
aaagtaataaatattgataagcaaattcccatacagaaaatatcctacgaattttttcag
gtgatagagttattaaagcctttcggtttcggtaatccgagtcctacttttcagacgaaa
aatattcttttggagaatataaagtttatcggagaaagtaaaaatcatcttatgttcgat
ttgaagcagaaaggattttcaaacagaaataccgtatggttcggagcaggagaatatttt
aaggaattaagtcaaaatgttgtttacgatattgtatacaagatgaaagtagagtctttt
caagacagatattacacaaaagtttatatagatgacatcaaagtgtcagatttgaaagat
gatactctttcttattatcattctttgtataatacttcttttccattaaagtcggtattt
tatacgaatattgatttggaaaaagactcgccccttactgtaaaaatagaatttgatcag
atttctctttttcagggcagaaaatttgtcggcagacttgattataatgtttcaaattta
ttgattttattgaatgaatattataatcagaattttaaaataaaaatagaaaatataaga
aaaacaggaaatcataatattgtcgatattttaataaagagggattataattttgagtgc
tatgattacaccgaaacttctattttcaggaaaataaaagaatttttaataggaaatatg
gagtatgacagctatacgaaaaaacttctttcgatatttttcaagcaaaataagaatttg
atgattaaaacgggaaaatcttctcaaaatatactgaataattttttgcttacaacaggg
atttactacatgaaacagactggaaagaaaagtaaaattattataaaaaatggcaaaaat
acaccttatgataatccttttataaaaacttattttgatataatgcctaaatataaaagt
gatggagattgtccatttgttttcttttgtgatgagcaggcgaaatttgaaaaatatata
ggtgagaataattcgggaacgagattttgttgtgtttcaaatgtcgattttgaaaaggat
tttgccggaaaatcggagcagttgtctgatgtcgaaataatagaaaatgttgaggaatta
cctgaaaatatagttttactgagcagtctgaaaaagtccgaattaaaagatttgaaaaat
atttttgtggaatatttgcctttaaaggaaaaaattcgactgaaaaaattatttcaggat
ggagaaacgatttattctgatgaggcggttagggagatattataa
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