Pseudoleptotrichia goodfellowii: JCM16774_1139
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Entry
JCM16774_1139 CDS
T06508
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
lgo
Pseudoleptotrichia goodfellowii
Pathway
lgo03410
Base excision repair
lgo03430
Mismatch repair
lgo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lgo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
JCM16774_1139
03430 Mismatch repair
JCM16774_1139
03440 Homologous recombination
JCM16774_1139
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lgo03400
]
JCM16774_1139
DNA repair and recombination proteins [BR:
lgo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
JCM16774_1139
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
JCM16774_1139
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JCM16774_1139
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Toprim
Motif
Other DBs
NCBI-ProteinID:
BBM36207
UniProt:
A0A510JAI5
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All DBs
Position
1101329..1103020
Genome browser
AA seq
563 aa
AA seq
DB search
MNWEMKNYDRDYLTFKSGEFGESELITRLLLNRGINSKEEVEKFLNSSENDLLNPFLLEN
MDEVTERILKAKKNREKIIIYGDYDVDGISAAAYLVIVFRKLGMNVDYYIPNRAHEGVGI
NSNLIKYLTKRNAGLFITVDTNIGSYEEVMMLKRNNIDIIITDHHRQTEEIKNFNIPTIN
PKISNNYPNRNLSGSGVAFKLADAVYEKCGVNKKILYDYLDIVMIGTVADVVPMTDENRF
IIKKGLYNLRKTKIKGMKYILNYLRINPNNITTSDVGFYIAPIFNALGRIDNSKMVVEFF
IEEDDFKLFSIIEEMKKANKIRRYLEIEIYNEIEEKIQRLNKPKYIFMKSRKWHSGVIGV
VCSRISIKYNIPVILVSIKNGYGKASCRSIEGLNIFDMLKETSDKFERFGGHDLAAGFLV
SEKYLKEIEIYLKKRLVTANKSNIEKVLYIDSALNIEQINKSKVLDINRLSPFGLDNQEP
NFVDKGIKFISFTKFGVNNRHFKGFIKKNDRIISVIGYNLGHKLKFKNINKKYEIVYTPS
FKSVRTDLFIELKLKDFRENRGG
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
gtgaactgggaaatgaaaaattatgatagggattatctgacttttaaaagcggagaattt
ggagaaagtgagcttataacaagacttcttttgaacagaggaataaactcgaaagaagaa
gtggaaaaatttctgaattccagtgaaaatgatttattgaatccgtttttacttgaaaat
atggatgaagtaacggaaagaatacttaaagcaaaaaaaaacagagaaaaaatcattatt
tacggggattatgacgtagacggaatatctgcggccgcttatctcgtaattgttttcaga
aagttgggaatgaatgtcgattactacattcccaacagggctcatgaaggcgtaggaata
aacagtaatcttataaaatatctgactaaaagaaatgcaggattgttcattactgtggat
acaaatatcgggagttatgaagaagtgatgatgctgaaaagaaataatatagatattatt
attacggatcatcatagacagacggaagaaataaaaaatttcaatattccgactataaat
cccaaaatcagcaataattatcccaatagaaatttatcaggatcgggagtagcttttaaa
ctggctgatgcggtatatgaaaaatgcggtgtaaataaaaagatactttatgattatctg
gacattgtaatgataggaactgtggctgacgtagttcctatgactgatgaaaacagattt
ataataaaaaagggattgtataatttaagaaaaactaaaataaaagggatgaaatacatt
ttaaattatttaagaattaatcccaataatataactacgagcgatgtaggattttatata
gcacctatattcaatgctctcggtagaattgataattccaaaatggtagtggaatttttc
attgaagaagatgattttaaactgttttcaataatcgaagaaatgaaaaaagccaataaa
atacgccgttaccttgaaatagaaatatataatgaaattgaggaaaaaatacaaagatta
aacaaacctaaatatatttttatgaagagcagaaaatggcattcgggagttatcggagta
gtctgctcgagaatatccataaaatacaatattcccgtaattctggtttcgataaaaaac
ggatacggaaaagcttcgtgcagaagtattgagggacttaatatattcgatatgctgaaa
gaaacttcggataaatttgaaagattcggagggcatgatcttgctgcgggatttcttgtt
tcggaaaaatatttgaaagagatagaaatttatctgaaaaaaagacttgttactgcaaac
aaatcgaatattgaaaaagtattgtatatagattcggctttgaatatagagcagataaat
aaaagtaaagtgctggatataaacagattgtcgcctttcggtctggacaatcaggaaccg
aattttgtagataaaggaataaaatttataagttttacaaaattcggagtaaataaccgt
cattttaaaggatttataaaaaagaatgacagaataatatcggtaatcggatataattta
gggcataaacttaagtttaaaaatattaataaaaaatatgaaatagtttatacaccttcg
tttaaatcagtaagaacggatttatttatagaattaaaattaaaagattttagagaaaat
agaggaggataa
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