Pseudoleptotrichia goodfellowii: JCM16774_1667
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Entry
JCM16774_1667 CDS
T06508
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lgo
Pseudoleptotrichia goodfellowii
Pathway
lgo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lgo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JCM16774_1667
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lgo03021
]
JCM16774_1667
03400 DNA repair and recombination proteins [BR:
lgo03400
]
JCM16774_1667
Enzymes [BR:
lgo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JCM16774_1667
Transcription machinery [BR:
lgo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JCM16774_1667
DNA repair and recombination proteins [BR:
lgo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JCM16774_1667
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
BSH_YknX
RnfC_N
BSH_RND
Peptidase_M23
Biotin_lipoyl
Motif
Other DBs
NCBI-ProteinID:
BBM36723
UniProt:
A0A510JFC6
LinkDB
All DBs
Position
complement(1647219..1651235)
Genome browser
AA seq
1338 aa
AA seq
DB search
MSIRDFDSIQIKLASPEKILEWSHGEITKAETINYRTLKPEMDGLFCERIFGPSKDYECS
CGKYKRMRYKGMTCEKCGVEVTTSKVRRERMGHIQLATPIAHIWYSKGTPNKMSLLLGIS
TKELESVLYFSRYIVTDKGDTELEKGQILTDREYKMYESQYKNGFTAKMGAEGVLKLLQE
IDLQELEKELEKEMESVNSSQKRKKIIKRLKIVRDLILAGNRPEWMILTILPVIPADLRP
MVQLDGGRFATSDLNDLYRRVINRNIRLNKLMSIKAPEIVIKNEKRMLQEAVDALIDNGR
RGKPVVTQNNRELKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMNQCGLPKK
MALELYKPFLMRELVKRELATNIKTAKKMVEEEDENVWELIEEIIKNHPVLLNRAPTLHR
LSIQAFEPTLIEGKAIRLHPLVCSAFNADFDGDQMAVHLVLSNEAQMEAKLLMLATNNIL
APSSGKPIAVPSQDMVMGCYYMTKERKGEKGEGKYFSNKNQLITAYQSKQVDTHALVKVR
IDGELIETTPGRLMFNTMLPKEVRNYSKTFGKGELAKLIAELYKKFGFEKTSELIDKIKN
FGFHYGTTAGITVGIEDLEIPVTKKAILEKAESDVAEVEEQYKSGEIIDAERYRRTVAIW
SEAVDRVTHEMMDNLDEFNPVYMMANSGARGSVAQMRQLGGMRGLMADTQGRIIEIPIKA
NFREGLNILEFFMSSHGARKGLADTALRTADSGYLTRRLVDISHEVIVNHDDCGCEEGIV
VSDLVDAGNVIEKLSERIYGRYLAEDLVHEGEVIAERNTMIMDDLIKKIEELDIKEVKIR
TPLTCKLEKGVCKKCYGLDLSNHKEILKGEAVGVIAAQSIGEPGTQLTMRTFHTGGVATA
AAVQSDYKADVSGKVKLKDITTLENEKGIEVVVSQTGRIIVGKHRYEVPSGSVLKVKDGE
SVKKGQVLVEFDPYQVPIITSESGKVEFRDIYVRENIDVKYGVTERIAIKPVESSDVNPR
IIIYNKNKKVAEYNVPYGAYLMVKEGETVKKGQIITKILKTGEGNKDITGGLPRVQELFE
ARNPKGKATLSEVSGRVIFSDKKKKGMRLITIEDPETGKPIKEYTVPVGEHLVVTNEMLI
EKGAKITDGPVSPHDILKIKGLVAAQQFILESVQQVYREQGVPINDKHIEIIVKQMFQKV
KIKEAGDTLFLEDELIDKKLVERENEKLIAKGKRPAIYEPIIQGITKAAVNTESFISASS
FQETTKVLANAAIEGKIDRLEGLKENVIIGKKIPGGTGFKDYKHIKVEIKNQGNKVPVIN
KEAKPEVEVIEEAEIVEE
NT seq
4017 nt
NT seq
+upstream
nt +downstream
nt
atgagtataagagattttgacagtattcaaattaaattggcatcgcccgagaaaattctt
gagtggtcacatggtgaaataacaaaagccgaaacaataaactacagaacattgaaacct
gaaatggacggattattctgtgaaagaatattcggaccgtctaaagattatgaatgttca
tgcggaaaatacaaaagaatgagatacaaaggtatgacttgtgaaaaatgcggagtggaa
gtaactacttctaaagtaagaagagaaagaatgggtcatattcaacttgcaacacctatt
gcacatatttggtattctaaaggaacacctaataaaatgagtcttttattagggataagt
acgaaagaacttgaatcagttctgtatttttcaagatatatagttacagataagggagat
actgaacttgaaaaaggacagatactaacagacagagaatataaaatgtatgaaagccag
tataaaaacggctttactgcaaaaatgggtgccgaaggagtgttaaaacttcttcaggag
atagatttacaggaattggaaaaagaacttgaaaaagaaatggaaagtgtaaattcttct
caaaaaagaaaaaaaataataaaaagacttaaaattgtaagagatttgatattggcagga
aacagaccggaatggatgattttaactattctgcccgttataccggcagatttaagacca
atggtgcagttggacggaggaagatttgcaacgtccgacttgaatgatttgtacagaaga
gttataaacagaaatataagattgaacaaacttatgtctataaaagctcccgaaatagta
ataaaaaatgaaaaaagaatgttgcaggaagctgtagacgcattgatagataacggtaga
agaggaaaaccggtagtaactcaaaataacagagaactgaaatctctgtcggatatgctt
aaaggaaaacagggaagattcagacagaaccttttgggaaaaagggttgactattcggga
agatcggttatcgtagtaggaccgaatcttaaaatgaatcagtgcggacttcctaaaaaa
atggcacttgagctttataagccgtttttaatgagagaacttgttaaaagagaattagct
acaaatataaaaactgcaaagaaaatggttgaggaagaagacgagaatgtatgggaattg
atagaagaaattataaaaaatcaccctgtacttttaaaccgtgctcccacattacacaga
ctttctatacaggcgtttgagcctacacttatagaaggaaaagccataagacttcatccg
ttggtatgttcggcatttaacgccgattttgacggtgaccagatggcggttcaccttgta
ttgtcaaatgaagcacaaatggaagcaaaacttttgatgcttgcgacaaataatatatta
gccccttcaagtggaaaaccgatagccgttccttcacaggatatggtcatgggatgctat
tatatgactaaagaaagaaaaggcgaaaaaggagaaggaaaatatttctccaataagaat
cagttaattacagcgtaccaaagtaaacaggtggatactcatgcccttgtaaaagtcaga
attgacggagagcttatagaaactactccgggaagacttatgtttaatacgatgcttcct
aaagaagtgagaaattattcaaaaactttcggaaaaggtgaattggcaaagttgatagcg
gaattatataaaaaattcggatttgaaaaaacttccgaattaatagataaaattaaaaat
ttcggattccattacggaacaactgcagggattacagtaggtatagaagacttggaaata
cctgttactaaaaaagctattctggagaaagccgaaagtgatgttgccgaagttgaagaa
cagtataaatcaggagaaataatagatgccgaaagatacagaagaactgtggcaatatgg
tctgaagctgtggacagagtaactcatgaaatgatggacaaccttgatgaatttaacccg
gtttacatgatggcgaactcgggagccagaggatccgtagctcagatgagacagctcgga
ggaatgagaggtcttatggcggatacccagggacgtatcatagaaatacctataaaagcc
aactttagagaaggtcttaacatactggaatttttcatgtcatctcacggagccagaaaa
ggattggcggatacggcattaagaactgccgattcgggatatttgacaagaagacttgta
gatatttcccatgaagttatagttaatcatgatgactgcggatgtgaagaaggaatagta
gtttctgatcttgtagatgcaggaaatgttattgagaaattaagtgaaagaatatacggt
agataccttgccgaagatttagttcatgaaggtgaagttatcgctgaaagaaatacaatg
ataatggacgatttaattaaaaaaatcgaagaattggatataaaagaagtaaaaataaga
actcctcttacatgtaaacttgaaaaaggggtatgtaaaaaatgttacggtcttgattta
tccaaccataaagaaatacttaaaggagaagctgtaggagttattgcagcacaatcgata
ggagagccgggaacacagcttacaatgcgtacgttccatacaggaggagttgctactgca
gctgcagttcagtccgactataaagccgacgtatcgggaaaagtaaaattgaaagatatt
actactcttgaaaatgaaaaaggaatagaagtagtcgtttcacaaacaggaagaataatt
gtaggaaaacacagatatgaagttccttcaggttccgtacttaaagtaaaagacggagaa
agcgtgaaaaaaggtcaagtactggttgaatttgatccttatcaagtgccgataattact
tcagaatcaggaaaagtggaatttagagatatttacgtgagagaaaatatagatgtaaaa
tacggagttacagaaagaatcgccataaaacctgtggaaagcagtgatgtaaaccctaga
attataatttacaataaaaataaaaaagtcgctgaatataatgtgccttacggagcatat
ctgatggtaaaagaaggagaaactgtaaaaaaaggtcagataataacaaaaatccttaaa
acaggagaaggaaacaaagatattacgggaggtcttcctagagtgcaggaattgtttgaa
gcacgtaatcctaaaggaaaagctacgttatctgaggtatcgggacgtgtaattttctct
gataaaaagaaaaaaggtatgagactaattactattgaagatcctgaaacaggaaaacct
ataaaagaatacactgttcctgtgggagaacatttggttgtaactaatgaaatgcttatt
gaaaaaggagcaaaaattaccgacggacctgtatcaccgcacgatatacttaaaataaaa
ggacttgttgcagctcagcagtttatattggaatcggtacaacaggtatatagagaacag
ggagttcctataaacgataaacatattgaaataatagtaaaacagatgttccagaaagtg
aagataaaagaagcaggagatacattattccttgaagatgaattaatcgataagaaatta
gtggaaagagaaaatgaaaaattgattgccaaaggtaaaagacctgcaatatacgaaccg
attatacaaggaataactaaagctgcagtaaatacagaaagctttatttcggcatcttca
ttccaggaaacaacaaaagttcttgcaaatgcggctattgaaggaaaaatagacagactt
gaaggcttgaaggaaaatgtaattatcggtaagaaaataccgggaggaacaggatttaaa
gattataaacatataaaagttgaaatcaaaaatcagggaaataaagttcctgttataaat
aaagaagcaaagcccgaagttgaggttatagaagaagctgaaattgtagaggaatag
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