Pseudoleptotrichia goodfellowii: JCM16774_1842
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Entry
JCM16774_1842 CDS
T06508
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lgo
Pseudoleptotrichia goodfellowii
Pathway
lgo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lgo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JCM16774_1842
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lgo03019
]
JCM16774_1842
03009 Ribosome biogenesis [BR:
lgo03009
]
JCM16774_1842
Enzymes [BR:
lgo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JCM16774_1842
Messenger RNA biogenesis [BR:
lgo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JCM16774_1842
Ribosome biogenesis [BR:
lgo03009
]
Prokaryotic type
rRNA helicases
JCM16774_1842
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
SNF2-rel_dom
DeaD_dimer
HTH_CLF_N
NAT10_TcmA_helicase
Cas3-like_C_2
Flavi_DEAD
AAA_19
VMAP-M9
Motif
Other DBs
NCBI-ProteinID:
BBM36896
UniProt:
A0A510JCU0
LinkDB
All DBs
Position
complement(1832887..1834644)
Genome browser
AA seq
585 aa
AA seq
DB search
MQRFEDYGLSQEVLNALEKKGFEEPSDIQKLVIPELLKERTHLIGQAQTGTGKTAAFGIP
ILETLEADKTVKALILAPTRELANQVADEIYSLKGKKDIKVLAVYGGASIENQIKKLKSG
VDIVVGTPGRVMDLMRKKVLKVNNLDYFVLDEADEMLNMGFIEDIELILEETNDEKKMLF
FSATIPKTIMSIAKKFMNDYKLLKVKKEELTTDLTEQIYYEVKQEDKFEALCRVLDYTQN
FYGIVFCRTKSEVDEVTNKLKARNYDAECIHGDITQGLRQKALDLFKKKILTILVATDVA
ARGIDVSNLTHVINYSIPQEAESYVHRIGRTGRAGHKGIAITFVTPREARTLSQIKRVTK
TDIKRETIPNVEEILNAKKEALIAYIDEIIKEEDYTSYEELADKLIEGRDPKQVLSSLLR
HFYEDEFLPENYSEIEDVKVKIDDKTRLFIALGSKDGYNPGRLLDLLNKKAKTPGRKVKD
IKIMDKYSFITVPLQEAEYIMRALNSKKDSKPLVEKATGGQSGGGSSEGKRTRGRKSEGE
SKRRRKSDDKTSKKAKKSGDKKVSSKTKEKSKKTEKASAKKKKSK
NT seq
1758 nt
NT seq
+upstream
nt +downstream
nt
atgcaaagatttgaagattacggattaagtcaggaagtacttaatgcgttggaaaaaaaa
ggttttgaagaaccgagtgatatacagaaactggtgataccggaattattaaaagaaaga
acacacttaataggtcaggcacaaacaggaacaggaaaaacagcggctttcggtataccg
atactggaaacgctcgaagcagataaaactgtaaaagctttgatattggcacctacgaga
gagcttgcaaatcaggtagctgatgaaatatactcgctgaaagggaaaaaagatataaaa
gttttggcagtatacggaggagcatcaatagaaaatcagattaaaaaacttaaatccgga
gtggatatcgttgtaggaactccgggaagagttatggatttgatgagaaaaaaagtattg
aaagtcaacaatcttgattatttcgtattagatgaagctgatgagatgcttaatatggga
tttattgaagatatagagttaatccttgaagaaactaacgatgagaaaaaaatgctattc
ttttccgcaactattccgaaaacgataatgagtatagctaaaaaatttatgaacgattac
aaacttctgaaagttaaaaaagaagaattgacaacggatctgactgaacagatttactat
gaagtaaaacaggaagataaatttgaagctttgtgcagagttttggattacactcagaat
ttttacggaatagttttctgtcgtacaaagtccgaagtggatgaagttacgaataaatta
aaagcaagaaattatgatgctgagtgtattcacggagatattacacaagggttaagacag
aaagcacttgatttattcaagaaaaaaatattgactatacttgttgccacagacgttgcg
gcgagaggaatagatgtaagcaatctgactcatgttataaactattccatacctcaggaa
gctgaatcttacgttcacagaataggaagaacaggaagagcgggacataaagggatagca
ataacttttgttacaccgagggaagcgagaactctttctcaaataaaaagagttacgaaa
accgacataaaaagagaaactatacctaatgtagaagaaatattaaatgctaaaaaagaa
gccttgattgcgtatatagacgaaatcataaaagaagaagattacacaagttatgaagaa
cttgcagataaattaatcgaaggaagagatcctaaacaggtattgtcttctcttttaaga
catttttatgaagatgagtttttacctgaaaattacagtgaaatagaagatgtcaaagta
aaaatagacgataaaacaagattgtttatagcacttggaagtaaagacggttacaatccg
ggaagacttcttgacttattgaataaaaaagcgaaaacaccgggaagaaaagtaaaagat
ataaaaattatggacaaatactcgtttataacagttcctttacaggaagccgagtatata
atgagagctttaaattccaaaaaagattctaaacctctagtagaaaaagcgacaggagga
caatcaggcggaggttcttctgaaggaaaaagaacaagaggaagaaaatccgaaggagaa
tccaaaagaaggagaaaatctgacgataaaacatcgaagaaagcaaaaaaatcaggagat
aaaaaagtaagctcgaaaacaaaagaaaaaagtaaaaaaacggaaaaagcttctgcaaag
aagaaaaaaagtaaatag
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