Leptospira gorisiae: AB3N59_10750
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Entry
AB3N59_10750 CDS
T10747
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lgor Leptospira gorisiae
Pathway
lgor03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lgor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AB3N59_10750 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lgor03400
]
AB3N59_10750 (mfd)
Enzymes [BR:
lgor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AB3N59_10750 (mfd)
DNA repair and recombination proteins [BR:
lgor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AB3N59_10750 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
Cas3-like_C_2
SNF2-rel_dom
UB2H
RecG_dom3_C
AAA_22
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
XDD48918
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All DBs
Position
1:complement(2383236..2386724)
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AA seq
1162 aa
AA seq
DB search
MKDLIPLLGETLFDSFSSASVKKKGAKTSKSGASASVDTDVVANVYSVVSGSHSILSCSL
FQRTQKTIVVVSENNTAAEFLYRESLSFLPAADLVYLPGQEVLPYEYMRYPAEMKRERIK
AIAKILSGESALVFTSVSGFLKTLPPVKTMKGRAVTLEKGKEINLELLLLELIDLGYKRA
DVCETFGEFSLKGGILDIYSSYSAEPVRIDLFGEEIESIRTFDPDTQKSMSDLKKAIILP
ADEYILSDDQKKEYQNLLKSSDSSLHLPEIPDANYGIYYEELVPLVRENHGILSYFSEPP
VLVFPSPNSVKERLLHLEREYDSLYKKRSKEILCAPPGKLLSFEEEHRVLSDLQGISLLG
LPPRNENDLVSPLKEAPAFKGKIREVRERIGELRSEGGWKIVLTSSFEAQTKRLQGLFEK
EGIVLLNEDAAEPIPFYLNNSKKDAFLVLSELRNGFIFENQKILILSENDIFGREYKRKT
RFKKQNSKALQSFIDLKEGDYVVHIHHGVGKFLKIERTNAGGKERDFLKLEYNGGDSLFV
PLDQISLVQRYIGGTESPRLDSLGKSTWKKTKDRVQKAVEELAEDLVRMYSNRLKLQGYA
FPPDTIYQEEFEAEFEFEETPDQIEAIESVKKDLESPRPMDRLVCGDVGYGKTEVAIRAA
FKVAMAGRQIMMLAPTTILALQHYNTFKSRFENYPLRVELVSRFKSPSEIREILAEFSEG
KVDMIIGTHAILSSKIKPKNLGLLVIDEEQRFGVNHKEAIKKFKNLVDVLTLTATPIPRT
LHMALTGIRELSIIATPPKNRQSVETYVLEEDENLIADAIRNEIQRDGQVFYLYNRVETI
EQETKYLNEIVPEVSIGVLHGQMTEDEIEETLLDFYNRKYDILVTTTIIESGIDMPNVNT
LFVKRADLFGLSQLYQIRGRVGRSDRKAYAYMLLPKDRVVTEQAEKRLNTIYEYQELGSG
FKVAMRDLEIRGAGNLLGKEQSGDIMEVGFDLYVRMLEEAIARIKGEEVAVEVRTSVTLN
TNFFIPEIYIADTRQKIEFYKKFEGARDLEEIDEVHKEMVDRFGEPPEDAKTFILLEKIR
TLASNLGFDSVAEMKDEIKMKSGSYFKGDNEKIIHLISARTGLTINPREPNVLIFQTGKK
SEKEKLDYLIFLLSEMLPSKKV
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atgaaggatttgattccgttactcggggagacattgtttgactccttttcttccgcttct
gtgaaaaagaaaggagcaaaaacctcaaagtcgggagcgagcgcttccgtcgacacagac
gttgtcgctaacgtgtattccgtagtttccggaagtcattcgattctttcctgttccttg
tttcaaagaactcaaaagacgatcgtagtcgtttccgaaaacaataccgccgccgagttt
ttatacagagaatccctgagttttcttcccgccgccgatcttgtttatcttcccggtcag
gaagtgcttccctacgaatacatgcgttatcctgcggagatgaaacgcgaacggatcaaa
gcaatcgcaaagattttaagcggtgaatccgcattggtgttcacttccgtttccggtttt
ttaaaaacgcttccccccgtaaagacgatgaaaggacgcgcggtcactctcgaaaaaggg
aaagagatcaatctcgaacttttacttttggaactgatcgatctcggatacaaacgcgcg
gatgtctgcgaaacttttggagagtttagtttaaaaggcgggatcttagacatctattct
tcctattccgcggagccggtacgaatcgatcttttcggggaagagatcgaatcgattcgt
acttttgatcccgacactcagaagtcgatgtccgatctcaaaaaagcgatcatcctgccg
gcggacgaatacattctttcggacgatcaaaaaaaagaatatcagaatcttctaaagtcc
tccgattcctctttgcacctgccagaaatcccggacgcaaattacggaatttattacgaa
gaattggttcctctcgtaagggagaatcacggaattctttcttatttttcagaacccccg
gttcttgtttttccttcgcccaattccgtgaaagaaagacttttgcatttggagagggaa
tacgattccctctataaaaaaagatccaaagaaatcctctgcgctcctcccggaaaactt
ttgtctttcgaagaggaacacagagttctttccgatttgcaaggaatttctttgttagga
ctcccgcctcgaaacgaaaacgatctcgtttcccctttgaaagaggcgcccgcgtttaag
ggaaaaatccgcgaagtccgtgaaagaatcggagaacttcgatcagaaggcggttggaag
attgttttgacttcctcttttgaggcccaaacaaaacggcttcaagggctttttgaaaag
gaaggaatcgttttgttaaacgaagatgccgcggaaccgattccgttttatctaaacaat
tccaaaaaggacgcgtttcttgtcctttccgaactcagaaacggatttatttttgaaaat
cagaaaattctaatcctatccgaaaacgatatttttggaagggaatacaaacggaagacc
cgttttaaaaaacaaaacagcaaagcgttacaaagttttatcgatttaaaagagggcgat
tacgtggtgcatatccatcacggggtcggaaaatttctaaaaatcgaaaggacaaacgca
ggcggaaaggaaagagactttctaaaattggaatacaacggaggggattctctttttgtt
cccctcgatcagatttctcttgttcagagatatatcggaggaaccgaatctcctcgtctg
gacagtcttggaaaaagcacttggaaaaaaacaaaggatcgggttcaaaaagcggtagaa
gaactcgcggaagatctggttcgcatgtattccaatcgtttgaaactccaaggttatgcg
tttcctccggatacgatttatcaggaggaattcgaagccgaattcgaatttgaagaaact
ccggatcagatcgaagcgatagaatccgtcaaaaaagatttggaatctccccgaccgatg
gaccggcttgtttgcggtgacgtgggttatggaaaaacggaagtcgcgattcgtgcagcg
tttaaggtcgcgatggcgggacgtcagatcatgatgttggccccgaccacgattttagca
ttacaacattataatacatttaagagtcgttttgaaaactatccgcttcgtgtggaactc
gtttctcgttttaaaagcccttccgaaatccgggaaattctggccgagtttagcgaggga
aaagtggatatgatcatcggaacccacgcgattctatcctccaagatcaaacccaaaaat
ctgggtcttttagtcatagacgaagaacaacgattcggcgtaaatcacaaggaagcgatc
aaaaagtttaagaatctcgtggatgttttgactctgaccgcgactccgattccgcgaacc
ctccatatggcgttgaccggaatccgcgagttatcgatcatcgcgactccgcctaagaac
cgtcagtcggtcgagacgtatgttcttgaggaggacgagaatttgatcgcggatgcgatc
cgaaacgaaatccaacgagacggtcaggttttttatctctacaaccgagtggagaccata
gaacaggaaaccaaatatctaaacgagatcgtccccgaggtatcgatcggagttttgcac
ggacagatgacagaggacgagatcgaagaaactcttttggatttttacaatcgaaaatac
gacatccttgtgacgaccacgatcatagaatcggggatcgatatgccgaatgtaaataca
ttgtttgtaaaacgtgcggatcttttcggtctttctcagttgtatcagatccgaggaaga
gtgggacgcagcgatcgcaaggcatacgcgtatatgcttcttcccaaggatagggttgtc
accgaacaagctgaaaaacgtctgaacacgatctacgaataccaggagttgggttcggga
tttaaggtggcaatgcgtgatttggaaatccgcggtgcgggaaacttgctcggtaaggaa
cagtccggagatatcatggaagtgggctttgatctttacgtccgcatgctcgaagaggcg
atcgcaagaatcaagggagaagaagtcgcggtggaagtgagaacttccgtgaccctcaac
acgaatttttttatacccgaaatatacatcgcggacactcgtcaaaaaatcgaattctac
aaaaagtttgaaggcgcaagagatcttgaagaaatcgacgaggttcacaaggaaatggtc
gatcgttttggcgaacctccggaagacgcaaagacatttatccttttggaaaaaatcaga
accctcgcatctaatttaggatttgattcggtcgcggaaatgaaagatgaaatcaagatg
aagtcgggctcttattttaaaggggacaacgaaaagatcattcatttaatttccgcgaga
actggattgacgatcaacccaagagaacccaacgtgcttatttttcagacaggaaaaaaa
tccgaaaaggaaaaactcgattatctgatctttcttctttcggaaatgcttccttctaaa
aaagtatag
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