Lactococcus garvieae ATCC 49156: LCGT_0003
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Entry
LCGT_0003 CDS
T01618
Name
(GenBank) ATP-dependent exonuclease subunit B
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
lgr
Lactococcus garvieae ATCC 49156
Brite
KEGG Orthology (KO) [BR:
lgr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lgr03400
]
LCGT_0003
Enzymes [BR:
lgr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LCGT_0003
DNA repair and recombination proteins [BR:
lgr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
LCGT_0003
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
ADDB_N
Dna2
Motif
Other DBs
NCBI-ProteinID:
BAK57516
LinkDB
All DBs
Position
2709..6032
Genome browser
AA seq
1107 aa
AA seq
DB search
MEIIYTEITQDLTQFLLERAQQALKEEKKVYYIVPSSMSFEKEKEILERISSGADTAVFD
LLVTRFKQLPYYFDRKEKNTDEKVELSQSGLSMLFRKVLKSFSKEELPLYYSLQSSPAFL
EMLVNLRAELVTANLTCEDLPESPKNVELSAILGRFEEELNLSYANFSEFQYFIQSINDG
KFNQVLHEAVIIIDGYTRFTAEEESFISALHSAGSEIVIGTYARSSDYKLTDFSLSVYTN
ALEMMQHFRNKFSAQISPVSNRTPDTVYDKLTRLIELETNFLQEKENIELESKDKEHFEI
WEAENQMAEIEAVAKDIRQKIFQGALFKDFTVLVGDVEAYAIPVQEIFDLYEIPFFYAQE
EAMSQHPLIIFLESLYAIKKNNYRTNDVVNLLKSKVYSGVNFSQDALDYFEYYVNKYKIR
GRKKFATAFEESEFLELEQVETLREEMLGEASALQNFLTGASEKTGAKWLEQFQHFLQEG
NILENMNLLYHQAEAEENHVLADKYEQVWKLLLSNLKEFQAVFAEQKMKVLEFLELILAG
LKGAKYRQIPANVDIVNVKDYELVEARTNKYIYAIGLTMANFPKIKKNSSLLSDEERAII
NQNVSHDDFRFIEQLNVTNSSKNTFTSVSLVNAATEKLVLSTPQIYANAQDDISALLQLF
IEHTKEGESIKREVSSVNLLETVTHIGNTRSLITNIGKIEHLLAQEETDGAEDKRSFWSS
LFRILHKENSDFQRLIYNLDQDIAPVSLAPETVKEIYNDKIHASVSSFERFYNCEYQYFL
EQTLGLESFENIDLNSKVVGNFFHEVFEKLLDKPNLTSENFDQHLESVLHEVDTSYARYF
TQDATAQFTWANLGEIVKQTAVVLKKGLGNDQMKTLATESAFGLPQSELGNFSIDKINLR
GRIDRIDQFFDESIGAIDYKSSQHKFDLASAYDGTSLQFLTYLDVLKQMNADQKLWGALY
LQLKNESINLSDVDYLGEIAALLAKKMRYEGLILEEYKDKVNQEIDVVNINRNNVYSQEE
FEGLIKLNESHYAHAGERLREGEIAINPVMTKEGIDKSGNVHGCRYCPLKSICRFEASRH
MNDYAREVGQKSRKEILEELKGGPVND
NT seq
3324 nt
NT seq
+upstream
nt +downstream
nt
atggaaatcatttatactgaaattacacaagatctaactcaatttcttttggagcgtgcg
cagcaggcattgaaagaagaaaaaaaagtttattatattgttccgtcttcaatgtctttt
gaaaaagaaaaggaaatattagagcgcatttcatcaggtgcagataccgccgtttttgac
ctcttagtcacacgttttaaacagcttccttattattttgatcgtaaagaaaaaaataca
gatgaaaaagtcgaactcagtcagtcaggattgagtatgctttttcgtaaagtcttaaag
tcgttttctaaagaagaactgccactttattatagtttgcaaagttcaccagcttttctt
gaaatgttggtaaatttgcgtgcagaattggttactgcaaatttgacatgtgaagactta
cctgaaagtcccaaaaatgtggagttatcagcaattttggggcgttttgaagaggaatta
aatctctcttatgctaatttttcagaatttcaatattttatacaaagtataaatgacggt
aaatttaaccaagtgttacatgaggcggtaatcatcattgatgggtatacccggtttact
gctgaagaagaaagttttatttctgcccttcattccgcaggttcagagattgtcattggg
acctatgcccgctcatcagactataagttgacagatttttctttatcggtttacacgaat
gctttagagatgatgcaacattttcgcaacaagttttctgctcaaatctctcctgtttcg
aatagaaccccagatacagtgtatgataagttgacacgtttgattgaactggaaactaat
tttcttcaagaaaaagaaaacattgaactggagagcaaagataaagaacatttcgaaatc
tgggaagcagaaaatcagatggcagaaatcgaagctgttgcgaaagacatccgccaaaag
atattccaaggcgctttatttaaagactttacggtattggttggtgatgtagaagcttat
gcaataccggttcaagaaatctttgacttgtatgagatcccttttttctatgctcaagaa
gaagccatgagtcagcatccattgattattttcttagaaagtctttatgcaataaaaaag
aacaattatcgtaccaatgatgtggttaatctccttaaaagtaaggtttacagtggtgta
aactttagccaagatgccttagattactttgaatactatgtgaacaagtataaaattcga
ggcagaaagaagtttgctactgcgtttgaagaaagtgaatttttggagctggagcaggtt
gaaactttaagagaagagatgcttggtgaagcctcagctctccaaaattttttgacaggt
gcttcagaaaaaacgggagccaaatggcttgaacaatttcaacattttctccaagaagga
aatattcttgagaatatgaatcttctttatcatcaagctgaagctgaagaaaatcatgtc
ttggcagataagtacgaacaggtttggaaattactgctctctaatttgaaggagtttcag
gccgtttttgctgagcaaaagatgaaagtactcgaatttcttgagttgattttagctggg
ttgaaaggtgcgaaatatcgccaaattcctgcaaatgttgatattgtcaatgtgaaggac
tatgaattggtggaagccaggaccaataagtatatctatgctatcggtttaacaatggct
aactttcctaaaataaagaaaaattctagcttactttcggatgaagaacgtgcgattatt
aatcaaaatgtatcccatgatgattttcgttttattgagcaattgaatgtgacaaactct
agtaaaaatacctttacaagtgtctctttagtcaatgccgcaacagaaaaactcgtactt
tccacacctcaaatttatgccaatgcgcaagatgatatttcggcattattgcagttattt
attgaacatacaaaagaaggagaaagtattaaacgtgaagtttcttcagtcaatctcctg
gaaacagtaacacatataggaaatacacgttctctcattacaaatattggaaaaattgag
catctacttgctcaagaggagactgatggagcagaggataaacgtagtttttggtccagt
ttattccgtattcttcataaagaaaattccgacttccaacgtttgatttataatcttgat
caagacatagctcctgtatccttggctcctgagactgtaaaagaaatttacaacgataaa
atccatgcctctgtgagtagttttgaacgcttttacaattgcgaataccaatacttttta
gaacagaccttgggattagaaagttttgaaaatattgatttgaattcaaaagtcgttggt
aatttctttcatgaagtttttgaaaaactgctagacaaacctaacttgaccagcgaaaat
tttgatcagcatttggaaagtgttttacatgaggttgacacttcttatgcccgttatttc
acacaagatgcaacagcacaatttacgtgggcgaatcttggagaaattgtcaagcaaact
gcagttgtgttgaaaaaaggcttgggaaatgatcagatgaagactttagcaaccgagagt
gcttttggtttgcctcaaagtgaactgggtaatttttctatagacaagattaatttacgg
ggaaggattgacagaatagatcaattttttgatgagagtatcggtgctattgattataaa
tccagtcaacataaatttgatcttgcctcggcctatgacggaacaagtttacagtttctc
acttatttagatgttctcaagcaaatgaatgctgatcaaaagctttggggagctctttac
ctacagttaaaaaacgaaagtattaatctttctgatgtagattatttaggagaaatagcc
gccttattagcgaaaaaaatgcgctatgaaggccttattctggaagagtataaggataag
gtaaatcaggaaattgacgttgttaacattaatcgaaataacgtttatagtcaagaagag
tttgaaggccttatcaagctcaacgaaagtcattatgctcatgcgggagaacgtctgcgt
gagggagaaatagcgattaatccagtcatgactaaagaaggtatcgataaatctgggaac
gtacacggttgccgctattgtcctttaaaatcaatttgtcgctttgaagcaagcaggcat
atgaatgattatgcccgtgaagttggtcaaaaaagtcgcaaagagattcttgaagaattg
aaaggaggtccagtaaatgactga
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