Lactococcus garvieae ATCC 49156: LCGT_0008
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Entry
LCGT_0008 CDS
T01618
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lgr
Lactococcus garvieae ATCC 49156
Pathway
lgr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lgr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LCGT_0008
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lgr03400
]
LCGT_0008
Enzymes [BR:
lgr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LCGT_0008
DNA repair and recombination proteins [BR:
lgr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LCGT_0008
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
RecG_dom3_C
UB2H
AAA_5
Motif
Other DBs
NCBI-ProteinID:
BAK57521
LinkDB
All DBs
Position
11703..15188
Genome browser
AA seq
1161 aa
AA seq
DB search
MKINEFFDQNHDLQSWQRSFAKAERTLLTGLSGTAQAMVMANAYENNPDKYVIVTDNQYH
ANELYDELSHLVEDEKVYQFFSDDNVYAEFAIASKDRTAYRLEALNFLLDAQQTGFLVIP
FMALRSLLPHPDNFQENYLLLTQGDEFEMENLLGIFASAGYEKTQRVMVPGEFSQRGDIV
DIYPLDAVQPLRLEFFGDEVDTIRTFDSETQRSLENMDQVEIYPASDFILMPWEFDQGVK
KLSAQLQNVTDPTARSYFEEVIAAAENHYYHKDLRKFAEYFYEKPASLLNYFPKNIQIFI
DDFQKINEANNKTEQELAEFIVSEKNMGRSFEGQSYLLDVISKLRSHKPASFFSNFQKGL
GNIKFDALYNFNQHSMQQFFGQMELFYTEVDRFVKQGFTVILAVSSEKLRSELQKLDLEL
QMVSSDEIQKGKINLLNLNLNNGFNFIDEKFVVITESEIFGKARKKKTRRLNITNAERLK
DYNELEVGDYVVHKNHGIGKYLGIQTIEVSGMHRDYLTIQYQNGDTISVPVDHLNLLSKY
SAAEGKTPKINKLNDGRWRKTISSVSKQVEDISEDLIKLYSARQALKGHAFSLDDVNQEE
FDNGFAYPETADQLRSISEIKRDMELERPMDRLLVGDVGFGKTEVAMRAAFKAINDNKQV
AVLVPTTVLAEQHYNNFMERFVNFGVNIAVLSRFQTKAQQIEILDKLKKGRVDLIIGTHR
LLSKDVEFLDLGLMIIDEEQRFGVKHKERLKELKTQVDVLTLTATPIPRTLHMSMLGIRD
LSVIETPPTNRYPVQTYVMETNYGVVRDAVLREISRGGQVYYIHNRVDSIEQKVSQLEEL
IPEARIGYIHGQMTEIQLENTLMDFINNEYDVLVATTIIETGVDIPNANTLFIENADMMG
LSQLYQLRGRVGRSNRVAYAYFMYKPEKILSEVSEKRLEAIKGFTELGSGFKIAMRDLSI
RGAGNLLGAEQSGFIDSVGFELYSQLLEEAVHKRMGGEKVKTKTNAEIMLGLDAFIPSYY
IGDERQKIEIYKRIRQVDTRKNYEELQDEMMDRFGEYPDEVAYLLEIGLLKTFADNALVE
KIEKNKFEVVLTMAKSANTMYDPQEYFEALSETTLKVSVGEKLGKMTFRFKIENRKDVVL
LREIMNFTEKLSELRDKHEKE
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgaaaataaacgaattttttgatcaaaaccacgatttacaatcgtggcagagaagtttc
gcaaaagcggagcgtacgcttttaaccggtctttctggaacggcgcaggcgatggttatg
gctaatgcttatgagaacaatccggataagtacgtgattgtcactgataatcaatatcat
gccaatgaactgtatgatgaactgtctcatcttgttgaggacgagaaggtttaccaattt
ttctcagatgataatgtttatgctgaatttgccatagcaagtaaagatcgaacagcatat
cgtcttgaagctctgaatttcctgcttgatgcacagcaaacaggttttttggttattcct
tttatggctttacgttcgctcttaccccaccctgataattttcaagaaaactatcttctc
ctgactcaaggcgatgaatttgagatggaaaatcttctcggaatttttgctagtgctggt
tatgagaaaacacagcgcgtgatggtacccggagagttttcacaacgtggcgatatcgtg
gatatttatccactggacgcagttcaacccttaaggttggaattttttggcgacgaagta
gatacgattcgtactttcgatagtgaaacacaacgctcactcgaaaatatggatcaagta
gaaatatatccggcgagcgattttattttaatgccttgggaatttgatcaaggggtaaaa
aaattaagtgcacagctacaaaatgtaaccgatcctacagcgcgatcttattttgaagaa
gtgattgcagccgcggaaaatcattattatcacaaagatttgcgtaagtttgcagaatat
ttttacgaaaaaccggcttctcttttgaattattttccgaaaaatattcaaattttcatt
gatgattttcagaaaattaacgaagccaataataaaacagaacaagaacttgcagaattt
attgtttcggaaaaaaatatggggcgctcttttgaggggcaaagttatcttttagatgtt
atttctaagttacgttctcacaaaccggcaagttttttctcgaattttcaaaaaggctta
ggtaatataaagtttgatgctttatataattttaatcaacattcgatgcaacagttcttt
gggcaaatggaactcttttacaccgaagttgacagatttgtaaaacaagggtttacagtt
attttggctgtatcttccgagaaactacgttcggagctccaaaaactagatttagagctt
caaatggtatcttctgatgaaattcaaaaaggaaaaataaaccttttgaatttaaatctt
aacaacggttttaattttattgatgagaaatttgtggttattaccgagtcagaaattttt
ggtaaagcacgaaagaaaaaaacacggcgcttaaatatcacaaatgcggaacgcctgaaa
gattataatgaactcgaagttggcgattacgttgtacataaaaatcacgggattgggaaa
tacttaggtattcaaaccatcgaagtatcaggaatgcaccgtgattacttgacgattcaa
tatcaaaatggtgatacgatatcggttccagttgatcatctgaatctattaagtaaatac
tctgcagccgaggggaaaactcccaagataaataagcttaatgatggccgttggcgtaaa
acgatatcgtctgtcagtaaacaagttgaagatatttctgaggacctgattaagctctat
tcggcaagacaagctttaaaaggccatgctttttctttggacgatgttaaccaggaagaa
tttgacaatggttttgcttacccagaaactgcagaccagctgcgctcaatcagtgaaata
aaaagggatatggaacttgaacgcccaatggatcgattactcgtaggggatgttggcttt
ggtaaaacagaggtcgcaatgcgtgcagcctttaaagcaatcaatgacaataaacaggta
gccgttttagtaccaactacagttttagcggaacaacactataataattttatggagcgc
tttgtaaactttggtgtaaacattgctgttttgagccgtttccaaaccaaggcgcaacaa
atagagattttggataagttaaagaaagggcgtgtggacttaatcattggtacccatcgt
cttctatccaaggatgttgaatttcttgacttgggtttaatgattattgacgaggaacag
cgttttggtgtcaaacacaaggaacgcttgaaagaattaaagacacaagtggatgttttg
acactcaccgcaacacctataccaagaaccttgcatatgtcaatgttaggtattcgtgat
ttatcggttattgaaacgccaccaacaaaccgttaccctgtccaaacatatgtaatggaa
acaaattatggtgtggtacgtgatgctgtgctccgagagatttctcgtggtgggcaggtt
tactacattcataaccgagtagacagtattgagcaaaaagtttcacagctggaagaactg
atacctgaggcaaggattggttatattcatggacagatgacagaaattcaattagaaaat
accttgatggattttataaataatgaatatgatgtcttagtggcaacgacgattattgaa
acaggggttgatattccaaatgccaatacgctctttattgaaaatgcagatatgatggga
ttatcgcagctgtatcaattaaggggacgtgtggggcgaagcaatcgagtcgcttatgct
tactttatgtataaaccagagaaaatattatctgaagtttcagaaaaacgtttagaagca
atcaagggatttacggaacttgggtcaggtttcaagattgcaatgcgcgacctttcaatc
cgaggcgcaggaaatttactgggagcagagcaatctggcttcattgattcggttggtttt
gaactttactcgcaattgcttgaagaagcagtccataaacgcatgggtggcgagaaagtt
aagacgaagaccaatgcggaaattatgcttggtttagatgcttttattccaagttattat
attggtgatgaaagacaaaaaattgagatttataaacgcattcgccaagtggatactcga
aaaaactatgaagaattacaagatgagatgatggaccgttttggagaatatccagacgag
gttgcttacttgctagaaattggtttattgaaaacatttgcggataatgctctcgttgaa
aaaatcgaaaaaaataaatttgaagtcgtacttacaatggcgaagtcagccaataccatg
tacgatccacaagagtattttgaagccttgtctgaaaccaccttaaaagtaagtgttggt
gaaaagctaggcaaaatgacttttcgttttaaaattgaaaatcgaaaagatgttgtcctc
ctacgtgaaatcatgaattttactgaaaaactttcagaattaagagataaacacgaaaaa
gaataa
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