Lactococcus garvieae ATCC 49156: LCGT_0286
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Entry
LCGT_0286 CDS
T01618
Name
(GenBank) ATP-dependent RNA helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
lgr
Lactococcus garvieae ATCC 49156
Brite
KEGG Orthology (KO) [BR:
lgr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lgr03019
]
LCGT_0286
03009 Ribosome biogenesis [BR:
lgr03009
]
LCGT_0286
Enzymes [BR:
lgr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LCGT_0286
Messenger RNA biogenesis [BR:
lgr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LCGT_0286
Ribosome biogenesis [BR:
lgr03009
]
Prokaryotic type
rRNA helicases
LCGT_0286
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DUF533
CMS1
Motif
Other DBs
NCBI-ProteinID:
BAK57799
LinkDB
All DBs
Position
289879..291219
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AA seq
446 aa
AA seq
DB search
MKFTEFNFKNYINETLEAIKFVSPTPVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIF
QQLNTDLDEVQAVITAPSRELATQIYHAAQEFVKFNDAIRVVNYVGGTDKARQIKKLESS
QPHIVIGTPGRIQDLLKSGALIIHTASIFVVDEADMTLDMGFLTDVDKIAASFGKKVQML
VFSATIPQKLQPFLKKYLNNPVMEKIANKTVISDTIENWLISTKGASHNQILLQLSKVTN
PYMAMIFANTKGRVDDIHHFLVSNGVKAAKIHGDIPPRERKRIMASIKNLDYQFVVATDI
AARGIDIEGVSHIINDELPRDLSFFVHRVGRSGRNGLSGTAITLYSPSDDSAIREIEKMG
VTFQPKAVKNGEIVDSYDRDRREKRTAKTGELSNKMRGQLAKSKKKVKPGYKRALKWAIE
EENTKKRRAEHNKNARKQREARKQKF
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttacagaatttaactttaagaattatatcaatgaaacgcttgaggcaatcaag
tttgtttcaccgacccccgttcaggaaaaactgattcctgtcgtattatcaggccgtgat
ttggtaggggaatcaaaaacaggttcaggaaagacacatactttcttactccctattttc
caacaattgaatacagatcttgatgaagtccaagccgtaatcacggcaccctctcgtgag
cttgccacgcagatttatcatgctgctcaggaatttgtcaaatttaacgatgctatccgc
gtggtcaactatgtgggcggaacagataaagcgcgtcaaattaaaaaacttgagtcttct
caaccccatatcgtgattggtacaccagggcgtattcaagatttgcttaaatcaggagct
ttgattattcacacagcctctatttttgtagtggatgaagcagacatgactttggatatg
ggcttcttgacagatgtggacaaaattgcagcgagctttggtaaaaaggtacagatgttg
gtcttctctgcaactattccacaaaagttacagcctttccttaaaaaatatttgaataat
cctgtgatggaaaaaattgcgaataaaaccgtaatttcagacacgattgaaaactggttg
atctcaactaaaggtgcatcacataaccaaattttattgcaactttcgaaggtaaccaat
ccttatatggcaatgatttttgctaatacaaagggacgcgtggatgatattcatcatttc
ttagtcagcaatggcgtcaaggccgcgaaaattcatggcgatatcccaccacgtgaacgt
aaacgtatcatggcaagcatcaagaacttagattatcagtttgttgtagcaacggatatt
gcagcacgtgggattgatattgaaggtgtaagtcatatcatcaacgatgaacttcctcgt
gatctttccttctttgtccaccgtgtagggcgctcaggacgtaacggtttgtccggaacg
gcgattacactttacagtccatctgatgattcagccattcgtgaaattgaaaaaatgggt
gtgactttccaacctaaagctgtgaaaaatggtgagatcgttgattcttatgatcgtgat
cgccgtgaaaaacgtacagcaaagacaggagaattgtctaacaaaatgcgtggccaattg
gctaagagtaagaaaaaagtcaaaccaggctataaacgtgccttgaaatgggcgattgaa
gaagaaaatacgaaaaaacgtcgtgcagagcataataaaaatgcacgtaagcaacgtgaa
gcccgcaaacaaaaattctaa
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