Lactococcus garvieae ATCC 49156: LCGT_0347
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Entry
LCGT_0347 CDS
T01618
Name
(GenBank) single-stranded-DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
lgr
Lactococcus garvieae ATCC 49156
Pathway
lgr03410
Base excision repair
lgr03430
Mismatch repair
lgr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lgr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LCGT_0347
03430 Mismatch repair
LCGT_0347
03440 Homologous recombination
LCGT_0347
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lgr03400
]
LCGT_0347
DNA repair and recombination proteins [BR:
lgr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
LCGT_0347
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
LCGT_0347
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LCGT_0347
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ssDNA-exonuc_C
RecJ_OB
DHH
DHHA1
TPP_enzyme_N
Glyco_transf_4
HTH_psq
Motif
Other DBs
NCBI-ProteinID:
BAK57860
LinkDB
All DBs
Position
352123..354357
Genome browser
AA seq
744 aa
AA seq
DB search
MIKSKYIWKLTESDLPDEFLKLSKKYKLDTLAAQILWQRGIRAEEEIQAYLNPDLQQLHD
TFLLHDMEKATQRILTAIENGQNILIYGDYDADGMTASSVMKSALDELGAEVQVYLPNRF
TDGYGPNLDVYKYFIQNEDIDLIITVDNGVAGHEAIAYAQSQNVDVIVTDHHSMPEELPK
AFAIVHPEHPESNYPFKYLAGVGVAFKVATALLDYIPSDMLDLVAIGTIADMVSLTDENR
ILVSHGLKVLANTERAGLMELMRLSGTDFEKVNEETVGFQIAPRLNALGRLDDPNPAIEL
LTGWDEEVAAEIAQMIDEKNSERKVIVENIYNQALTMMTDEPIEVLYHPDWHKGVLGIVA
GRLLEQFHKPIIMLAEEEGILRGSARSIENFNIFEALNGHRELFIAFGGHKQAAGMTFAL
ENVEAIKQVMLEFIQENDIDMSEKSSLEVQGSLQFDQISLETIRSLEKLSPYGMDNPKPH
FLLTDYQVEQARSMGKDNSHLKLKLVQNGQALDAVYFGHGSESLEFEQSDTELVGTLSSN
TWNGTTTVQLMVADARVNGVELLDIRSRQVELPKNTIRFVHNEVKNGTIEEVLIIEEAPT
DKDALSALTELIHEQDFELIYFKNTIKKNYYLTGAGTREQFARFYKAIYQYPEFDIRFKL
KDLANYLKIPDILMVKMIQIFEELNFVTIDNGMMSVNKAAEKRDISESNIYQELQEIIAF
QELFALSPVKEIYKKLKEEDAHAT
NT seq
2235 nt
NT seq
+upstream
nt +downstream
nt
ttgattaaatcaaaatatatatggaagttaactgagtcagacttaccggatgagtttctt
aagttaagtaaaaagtataaattagacacactggcagcgcaaattttgtggcaacgcggc
ataagggcagaagaagagattcaagcttacttaaatcctgatcttcagcaattacatgat
acgtttttgctgcacgatatggaaaaagccactcaaagaattttgactgccattgaaaat
ggacaaaatatcttaatatatggggattatgatgcggatggtatgacggcgagttccgtg
atgaaatcagctttggatgaattgggagcggaagtacaggtctatcttcctaaccgcttt
accgatgggtacggaccaaatcttgatgtctataaatatttcattcaaaatgaagacatt
gacttgattattacagtggataatggtgtagctggtcatgaagctatcgcctatgcacaa
agtcaaaatgttgatgttattgtaactgaccaccacagtatgccagaagagctgcccaaa
gcttttgcaattgtgcatcctgaacacccagaatcaaactatcctttcaagtatttggcc
ggagtaggggttgcttttaaagtcgccaccgcacttttagactatattccttcggatatg
cttgacttggtggcaatcggaacaattgcggatatggttagtctcaccgatgaaaatcgg
atcttggtgagtcacggactaaaagtattagcgaatacagagcgtgcaggcttaatggaa
ctcatgcgcctctcaggaaccgattttgaaaaggtgaatgaggaaacggttggttttcaa
attgccccccgtttgaatgctctaggacgcttagatgatccaaatcctgcaattgaacta
ttaacgggctgggatgaagaagtggctgccgaaattgcgcaaatgattgatgaaaaaaat
agcgagcgtaaagttatcgtagaaaatatctacaatcaagccctcaccatgatgacggat
gaacccatagaagttctttatcatccggattggcataaaggtgttctaggtattgttgca
ggacgcttacttgagcaatttcacaaacctatcattatgttggctgaagaagagggaatt
cttcgaggttcagcacgttcgattgaaaactttaatatttttgaagcactcaatgggcac
cgtgagctttttatcgcttttgggggtcacaaacaggcagctggaatgacttttgccttg
gagaatgtggaagcaatcaagcaagtgatgctcgagtttatccaagaaaatgacattgat
atgtcagagaaaagttcactagaagttcagggcagcctacagtttgaccagattagctta
gagacgattaggagtttagagaagctatctccttacggtatggataatccgaaacctcat
tttctccttacggattatcaggttgagcaggcgcgtagcatgggaaaagacaacagtcat
ctcaaacttaaattagtacaaaatgggcaagctttagatgcggtttactttgggcatggg
tctgaaagcctggaatttgaacaaagtgacacagaacttgtcggtaccttatcgagcaac
acttggaatggtacaacaaccgtacagcttatggtggctgatgccagagtaaatggtgtt
gaacttctggatattcgaagtcgacaagttgaattgccaaaaaatacaatacgttttgtc
cataatgaagtgaaaaatggtacaatagaagaagtgcttattattgaggaagccccaaca
gataaggatgccttatctgctttgacggaactaatacatgagcaggattttgaattgatt
tatttcaaaaatacaatcaagaaaaattattatttgacgggagcggggacgcgtgagcag
tttgcacgcttctataaagcaatctatcagtatcctgagtttgatattcgttttaaattg
aaagacctagcaaattatttgaagatccccgatattttaatggtaaagatgattcaaata
tttgaagaactgaattttgtcaccattgataatggcatgatgagtgtgaataaagccgct
gaaaagcgtgatatttctgaaagtaacatttaccaagaacttcaagaaatcattgccttt
caagaacttttcgccttatcccctgtcaaagaaatttataaaaaattaaaagaggaagat
gcacatgcaacttaa
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